LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-108B14.5
hsa-miR-654-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564681
Biotype: lincRNA
Gene id: ENSG00000260205
Gene Name: RP11-108B14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3079-3084
0.023
1
6mer
2652-2674
0.008
3
XLOC_010666
hsa-miR-654-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022061
Biotype: transcript isomorph
Gene id: XLOC_010666
Gene Name: XLOC_010666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-57
0.025
1
6mer
712-726
0.005
1
LINC00710
hsa-miR-654-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000615861
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-234
0.031
0
RP11-354M20.3
hsa-miR-654-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451610
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-254
0.022
10
7mer
221-231
0.009
1
LINC00710
hsa-miR-654-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619619
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-234
0.031
0
LINC00710
hsa-miR-654-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000622401
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-234
0.031
0
XLOC_002251
hsa-miR-654-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004369
Biotype: transcript isomorph
Gene id: XLOC_002251
Gene Name: XLOC_002251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1374-1400
0.021
0
6mer
406-431
0.005
0
6mer
1459-1473
0.005
1
AC010731.3
hsa-miR-654-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415029
Biotype: antisense
Gene id: ENSG00000231653
Gene Name: AC010731.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-512
0.023
Not Conserved
7mer
244-249
0.007
0
RP11-281A20.2
hsa-miR-654-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421509
Biotype: lincRNA
Gene id: ENSG00000228512
Gene Name: RP11-281A20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-449
0.020
1
7mer
78-101
0.007
1
6mer
462-480
0.004
Not Conserved
AC009518.4
hsa-miR-654-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415393
Biotype: lincRNA
Gene id: ENSG00000224865
Gene Name: AC009518.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1186-1196
0.026
0
6mer
808-823
0.004
1
SNHG17
hsa-miR-654-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000413755
Biotype: lincRNA
Gene id: ENSG00000196756
Gene Name: SNHG17
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-560
0.031
2
RP11-762I7.4
hsa-miR-654-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547009
Biotype: sense_intronic
Gene id: ENSG00000257509
Gene Name: RP11-762I7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-15
0.017
1
7mer
493-500
0.013
1
RP11-495P10.5
hsa-miR-654-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427169
Biotype: lincRNA
Gene id: ENSG00000238107
Gene Name: RP11-495P10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1503-1521
0.026
1
6mer
1266-1273
0.005
0
LY86-AS1
hsa-miR-654-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000435641
Biotype: antisense
Gene id: ENSG00000216863
Gene Name: LY86-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-706
0.019
1
7mer
968-986
0.006
1
6mer
2578-2594
0.003
1
6mer
2134-2156
0.002
0
RP11-266J6.2
hsa-miR-654-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602768
Biotype: antisense
Gene id: ENSG00000269886
Gene Name: RP11-266J6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-137
0.030
4
LINC00710
hsa-miR-654-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601050
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-251
0.030
0
RP11-213G6.2
hsa-miR-654-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520375
Biotype: lincRNA
Gene id: ENSG00000254002
Gene Name: RP11-213G6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-303
0.030
1
RP11-399C16.3
hsa-miR-654-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000624879
Biotype: sense_intronic
Gene id: ENSG00000279623
Gene Name: RP11-399C16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
367-373
0.026
0
6mer
334-359
0.005
0
XLOC_010384
hsa-miR-654-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021786
Biotype: transcript isomorph
Gene id: XLOC_010384
Gene Name: XLOC_010384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-168
0.019
1
6mer
1586-1598
0.005
4
6mer
1310-1325
0.003
3
6mer
1446-1457
0.003
1
CTD-2311B13.5
hsa-miR-654-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000613990
Biotype: antisense
Gene id: ENSG00000275563
Gene Name: CTD-2311B13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-177
0.028
2
6mer
797-814
0.003
0
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