LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
CTC-251D13.1
hsa-miR-654-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606930
Biotype: antisense
Gene id: ENSG00000271795
Gene Name: CTC-251D13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
699-719
0.019
4
7mer
2065-2073
0.005
1
6mer
2881-2906
0.004
6
6mer
3262-3285
0.004
1
EMX2OS
hsa-miR-654-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5844-5852
0.014
0
7mer
3673-3694
0.006
2
7mer
1277-1295
0.004
Not Conserved
6mer
470-479
0.003
0
7mer
4740-4753
0.003
2
7mer
4358-4369
0.002
0
XLOC_000507
hsa-miR-654-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000360
Biotype: transcript isomorph
Gene id: XLOC_000507
Gene Name: XLOC_000507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1596-1607
0.023
0
6mer
330-343
0.004
0
6mer
1489-1505
0.004
1
RP11-437F6.1
hsa-miR-654-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546118
Biotype: antisense
Gene id: ENSG00000256473
Gene Name: RP11-437F6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
96-114
0.032
1
MIR663AHG
hsa-miR-654-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000596717
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
645-651
0.020
1
6mer
682-693
0.008
1
6mer
547-564
0.003
2
XLOC_007350
hsa-miR-654-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015669
Biotype: transcript isomorph
Gene id: XLOC_007350
Gene Name: XLOC_007350
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-121
0.030
2
6mer
471-493
0.001
Not Conserved
LINC01140
hsa-miR-654-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000490006
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1170-1183
0.032
10
XLOC_001591
hsa-miR-654-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003793
Biotype: transcript isomorph
Gene id: XLOC_001591
Gene Name: XLOC_001591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1437-1456
0.032
1
RP11-388P9.2
hsa-miR-654-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414383
Biotype: antisense
Gene id: ENSG00000232682
Gene Name: RP11-388P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-508
0.021
3
6mer
244-248
0.010
9
RP11-201E8.1
hsa-miR-654-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462011
Biotype: lincRNA
Gene id: ENSG00000244464
Gene Name: RP11-201E8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2069-2089
0.018
4
7mer
2090-2104
0.013
0
CTD-2291D10.3
hsa-miR-654-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600896
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
185-200
0.014
0
6mer
114-131
0.014
0
6mer
66-80
0.004
Not Conserved
CTD-2194L12.2
hsa-miR-654-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513673
Biotype: lincRNA
Gene id: ENSG00000248539
Gene Name: CTD-2194L12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-67
0.031
Not Conserved
RP11-60I3.4
hsa-miR-654-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000524512
Biotype: antisense
Gene id: ENSG00000254571
Gene Name: RP11-60I3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-174
0.031
8
RP11-723G8.1
hsa-miR-654-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563639
Biotype: lincRNA
Gene id: ENSG00000260457
Gene Name: RP11-723G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-464
0.031
1
LINC01517
hsa-miR-654-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-386
0.031
0
RP11-87P13.2
hsa-miR-654-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550279
Biotype: lincRNA
Gene id: ENSG00000258338
Gene Name: RP11-87P13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-472
0.018
5
7mer
366-391
0.013
0
LINC00645
hsa-miR-654-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557399
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3265-3280
0.020
0
7mer
2562-2573
0.007
1
6mer
2628-2637
0.003
2
6mer
1205-1223
0.002
1
XLOC_009152
hsa-miR-654-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019914
Biotype: transcript isomorph
Gene id: XLOC_009152
Gene Name: XLOC_009152
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-328
0.031
1
RP1-151F17.2
hsa-miR-654-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606924
Biotype: lincRNA
Gene id: ENSG00000272341
Gene Name: RP1-151F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-98
0.012
0
7mer
2028-2053
0.011
1
6mer
47-69
0.006
2
6mer
1328-1336
0.002
1
AC004448.5
hsa-miR-654-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610229
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-21
0.019
0
7mer
231-251
0.012
0
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