LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008328
hsa-miR-654-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-32
0.070
0
6mer
997-1020
0.010
0
AF064858.6
hsa-miR-654-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380931
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-303
0.038
1
7mer
2804-2825
0.015
6
7mer
75-99
0.013
1
6mer
65-91
0.005
0
6mer
3569-3589
0.004
0
6mer
458-482
0.004
1
BACE2-IT1
hsa-miR-654-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433378
Biotype: antisense
Gene id: ENSG00000224388
Gene Name: BACE2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-56
0.079
1
RP11-75L1.1
hsa-miR-654-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541404
Biotype: lincRNA
Gene id: ENSG00000256582
Gene Name: RP11-75L1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-304
0.064
0
7mer
8-34
0.014
Not Conserved
CTD-3010D24.3
hsa-miR-654-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584975
Biotype: lincRNA
Gene id: ENSG00000263893
Gene Name: CTD-3010D24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-871
0.078
1
XLOC_013272
hsa-miR-654-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-730
0.025
0
6mer
288-302
0.016
0
6mer
252-268
0.011
0
6mer
569-588
0.009
0
6mer
1383-1396
0.003
Not Conserved
6mer
1512-1527
0.003
Not Conserved
6mer
1805-1820
0.003
Not Conserved
6mer
1307-1322
0.002
Not Conserved
6mer
1082-1097
0.002
Not Conserved
6mer
1156-1171
0.002
Not Conserved
6mer
880-889
0.001
Not Conserved
AC015971.2
hsa-miR-654-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424788
Biotype: antisense
Gene id: ENSG00000228363
Gene Name: AC015971.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-210
0.077
7
XLOC_008878
hsa-miR-654-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-514
0.041
0
7mer
234-258
0.035
0
XLOC_011309
hsa-miR-654-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023980
Biotype: transcript isomorph
Gene id: XLOC_011309
Gene Name: XLOC_011309
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-178
0.075
0
XLOC_013931
hsa-miR-654-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2318-2340
0.033
0
7mer
1602-1614
0.029
0
6mer
1819-1844
0.012
0
AC007126.1
hsa-miR-654-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508202
Biotype: lincRNA
Gene id: ENSG00000250497
Gene Name: AC007126.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-570
0.039
1
7mer
423-440
0.012
0
7mer
991-1008
0.006
0
6mer
4632-4640
0.006
3
6mer
93-110
0.005
0
8mer
2117-2141
0.003
1
7mer
3325-3342
0.002
0
AC010745.1
hsa-miR-654-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444804
Biotype: lincRNA
Gene id: ENSG00000226041
Gene Name: AC010745.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
588-613
0.073
0
XLOC_006462
hsa-miR-654-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013823
Biotype: transcript isomorph
Gene id: XLOC_006462
Gene Name: XLOC_006462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-265
0.072
0
RP11-15H20.6
hsa-miR-654-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
423-447
0.032
1
6mer
565-581
0.010
1
6mer
2495-2503
0.009
0
6mer
771-786
0.009
1
6mer
976-990
0.007
1
6mer
494-509
0.005
0
RP11-309H21.3
hsa-miR-654-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2890-2909
0.060
0
6mer
2202-2219
0.009
0
6mer
2282-2289
0.002
Not Conserved
AP000688.29
hsa-miR-654-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2095-2117
0.030
0
7mer
1379-1391
0.029
0
6mer
1596-1621
0.011
0
XLOC_009222
hsa-miR-654-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-38
0.054
0
7mer
2035-2053
0.011
0
6mer
1501-1511
0.005
0
RP11-544D21.2
hsa-miR-654-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561926
Biotype: lincRNA
Gene id: ENSG00000259776
Gene Name: RP11-544D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-275
0.044
1
8mer
2532-2540
0.020
0
6mer
252-275
0.004
0
CTA-796E4.5
hsa-miR-654-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1808-1815
0.016
8
7mer
31665-31685
0.012
0
8mer
8355-8361
0.010
1
7mer
23790-23796
0.004
1
7mer
21795-21815
0.003
2
7mer
17446-17464
0.003
1
7mer
9219-9229
0.002
1
6mer
16090-16096
0.002
1
6mer
27774-27788
0.002
0
6mer
7750-7765
0.002
1
6mer
20542-20551
0.002
Not Conserved
6mer
14864-14874
0.002
1
6mer
16895-16912
0.001
0
6mer
2769-2782
0.001
1
6mer
28051-28077
0.001
1
6mer
26534-26552
0.001
1
6mer
22503-22528
0.001
Not Conserved
6mer
7826-7836
0.001
1
LOC100128885
hsa-miR-654-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
167-182
0.015
1
7mer
1335-1351
0.008
0
6mer
368-381
0.006
0
6mer
656-668
0.005
0
6mer
3737-3748
0.005
0
6mer
437-453
0.005
0
6mer
865-884
0.005
0
6mer
3296-3310
0.004
0
6mer
3461-3474
0.003
0
6mer
904-916
0.003
0
6mer
2998-3014
0.003
0
6mer
1829-1845
0.002
0
6mer
1016-1032
0.002
0
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