LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-757F18.5
hsa-miR-654-3p
0.515
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000563632
Biotype: antisense
Gene id: ENSG00000261488
Gene Name: RP11-757F18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:112133995-112134023
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-96D1.11
hsa-miR-654-3p
0.583
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000571197
Biotype: antisense
Gene id: ENSG00000262160
Gene Name: RP11-96D1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
16:68226264-68226292
exon
HITS-CLIP
DIRECT
LncBasev2
RPL18AP3
hsa-miR-654-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000462885
Biotype: processed_pseudogene
Gene id: ENSG00000213442
Gene Name: RPL18AP3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:104265619-104265647
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_002245
hsa-miR-654-3p
0.599
mTTBlnPmP
IP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004366
Biotype: transcript isomorph
Gene id: XLOC_002245
Gene Name: XLOC_002245
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr2:105336951-105336979
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_008454
hsa-miR-654-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018162
Biotype: transcript isomorph
Gene id: XLOC_008454
Gene Name: XLOC_008454
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary

miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr10:37379161-37379189
exon
HITS-CLIP
DIRECT
LncBasev2
XRCC6P1
hsa-miR-654-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000420392
Biotype: processed_pseudogene
Gene id: ENSG00000237417
Gene Name: XRCC6P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:93209519-93209547
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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