LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
PWRN2
hsa-miR-654-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-661
0.012
0
7mer
3488-3510
0.010
1
7mer
550-558
0.008
Not Conserved
6mer
4246-4266
0.002
Not Conserved
6mer
2056-2061
0.002
Not Conserved
XLOC_009323
hsa-miR-654-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2468-2487
0.021
1
7mer
1411-1429
0.004
1
7mer
1952-1965
0.004
0
6mer
297-320
0.004
2
XLOC_004836
hsa-miR-654-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010348
Biotype: transcript isomorph
Gene id: XLOC_004836
Gene Name: XLOC_004836
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-59
0.032
5
RP11-162J8.2
hsa-miR-654-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000413845
Biotype: antisense
Gene id: ENSG00000227660
Gene Name: RP11-162J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-242
0.032
Not Conserved
XLOC_011424
hsa-miR-654-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023625
Biotype: transcript isomorph
Gene id: XLOC_011424
Gene Name: XLOC_011424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-181
0.032
6
RP11-93G5.1
hsa-miR-654-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617568
Biotype: lincRNA
Gene id: ENSG00000274317
Gene Name: RP11-93G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4408-4426
0.024
0
6mer
4550-4574
0.003
1
7mer
3838-3862
0.003
0
6mer
1055-1073
0.002
0
RP11-100L22.1
hsa-miR-654-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522531
Biotype: lincRNA
Gene id: ENSG00000253177
Gene Name: RP11-100L22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-30
0.032
0
RP11-586K2.1
hsa-miR-654-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520849
Biotype: antisense
Gene id: ENSG00000253553
Gene Name: RP11-586K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-519
0.032
2
RP11-932O9.10
hsa-miR-654-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602684
Biotype: lincRNA
Gene id: ENSG00000269974
Gene Name: RP11-932O9.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-264
0.032
0
LINC00632
hsa-miR-654-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000370535
Biotype: lincRNA
Gene id: ENSG00000203930
Gene Name: LINC00632
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-231
0.030
1
6mer
959-967
0.003
0
XLOC_000255
hsa-miR-654-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000984
Biotype: transcript isomorph
Gene id: XLOC_000255
Gene Name: XLOC_000255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-85
0.032
0
RP11-319G9.3
hsa-miR-654-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568885
Biotype: sense_intronic
Gene id: ENSG00000260816
Gene Name: RP11-319G9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3772-3789
0.022
4
7mer
1454-1459
0.006
1
6mer
1201-1213
0.002
0
6mer
1744-1760
0.002
0
DIAPH2-AS1
hsa-miR-654-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000579945
Biotype: antisense
Gene id: ENSG00000236256
Gene Name: DIAPH2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
868-877
0.021
1
7mer
768-786
0.011
0
CTD-3229J4.1
hsa-miR-654-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564852
Biotype: lincRNA
Gene id: ENSG00000261555
Gene Name: CTD-3229J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1551-1556
0.016
3
6mer
17-36
0.007
0
6mer
518-537
0.005
1
6mer
1136-1157
0.004
1
RP11-342K6.1
hsa-miR-654-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604845
Biotype: antisense
Gene id: ENSG00000270696
Gene Name: RP11-342K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1443-1456
0.029
3
6mer
165-183
0.004
0
RP11-63E9.1
hsa-miR-654-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000565399
Biotype: lincRNA
Gene id: ENSG00000259828
Gene Name: RP11-63E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-27
0.026
0
7mer
2524-2541
0.006
1
RP11-436I24.1
hsa-miR-654-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027113.2
Biotype: antisense
Gene id: NR_027113.2 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
977-1002
0.014
3
7mer
1220-1238
0.011
1
6mer
164-177
0.007
2
RP3-368A4.5
hsa-miR-654-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603037
Biotype: sense_intronic
Gene id: ENSG00000271430
Gene Name: RP3-368A4.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-526
0.012
0
7mer
3424-3445
0.008
1
6mer
3600-3619
0.004
1
6mer
474-491
0.003
0
6mer
3296-3313
0.003
1
6mer
3653-3671
0.001
Not Conserved
XLOC_003546
hsa-miR-654-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3202-3225
0.016
2
7mer
358-364
0.007
Not Conserved
8mer
2183-2206
0.006
0
6mer
3154-3172
0.003
0
ASAP1-IT2
hsa-miR-654-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_045385.1
Biotype: sense
Gene id: NR_045385.1 (gene)
Gene Name: ASAP1-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-555
0.019
1
7mer
1379-1398
0.008
2
7mer
1034-1050
0.005
1
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