LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
CTA-929C8.9
hsa-miR-654-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18511-18537
0.005
1
8mer
9915-9932
0.004
0
7mer
20169-20195
0.004
Not Conserved
7mer
6548-6571
0.004
0
6mer
3682-3709
0.002
1
6mer
14133-14138
0.002
1
6mer
3127-3135
0.002
1
6mer
19290-19304
0.002
0
6mer
22357-22364
0.002
1
6mer
9362-9372
0.002
0
6mer
7256-7264
0.001
1
6mer
11266-11286
0.001
1
6mer
13242-13263
0.001
0
RP11-267M23.4
hsa-miR-654-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523011
Biotype: lincRNA
Gene id: ENSG00000253704
Gene Name: RP11-267M23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
725-731
0.030
0
6mer
1274-1289
0.004
1
XLOC_010348
hsa-miR-654-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021754
Biotype: transcript isomorph
Gene id: XLOC_010348
Gene Name: XLOC_010348
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-297
0.025
7
6mer
268-282
0.009
5
RP11-315E17.1
hsa-miR-654-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546936
Biotype: antisense
Gene id: ENSG00000258162
Gene Name: RP11-315E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-675
0.033
1
AL133243.2
hsa-miR-654-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617415
Biotype: sense_intronic
Gene id: ENSG00000276517
Gene Name: AL133243.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2944-2952
0.015
0
7mer
693-713
0.013
1
6mer
2652-2675
0.004
0
6mer
1378-1400
0.001
0
RP11-6N13.1
hsa-miR-654-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503650
Biotype: lincRNA
Gene id: ENSG00000251574
Gene Name: RP11-6N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-137
0.028
7
6mer
641-646
0.005
0
LINC01021
hsa-miR-654-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512067
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1286-1305
0.029
1
6mer
976-1000
0.003
0
6mer
1033-1053
0.002
0
CTD-2554C21.3
hsa-miR-654-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000443870
Biotype: lincRNA
Gene id: ENSG00000229481
Gene Name: CTD-2554C21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
740-754
0.023
5
7mer
1484-1507
0.010
5
XLOC_006743
hsa-miR-654-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014653
Biotype: transcript isomorph
Gene id: XLOC_006743
Gene Name: XLOC_006743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-215
0.033
1
SNHG17
hsa-miR-654-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000456953
Biotype: lincRNA
Gene id: ENSG00000196756
Gene Name: SNHG17
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-478
0.033
2
DIAPH2-AS1
hsa-miR-654-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000439759
Biotype: antisense
Gene id: ENSG00000236256
Gene Name: DIAPH2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
893-902
0.021
1
7mer
793-811
0.012
0
RP11-524H19.2
hsa-miR-654-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425089
Biotype: antisense
Gene id: ENSG00000224984
Gene Name: RP11-524H19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-477
0.033
2
RAD51L3-RFFL
hsa-miR-654-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037714.1
Biotype: sense
Gene id: NR_037714.1 (gene)
Gene Name: RAD51L3-RFFL
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1035-1061
0.030
1
6mer
857-883
0.002
2
AC144833.1
hsa-miR-654-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567953
Biotype: sense_intronic
Gene id: ENSG00000261426
Gene Name: AC144833.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4024-4041
0.019
1
7mer
1540-1546
0.005
1
6mer
3811-3837
0.004
2
8mer
2798-2808
0.004
0
XLOC_013739
hsa-miR-654-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028384
Biotype: transcript isomorph
Gene id: XLOC_013739
Gene Name: XLOC_013739
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-517
0.033
2
MUC19
hsa-miR-654-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24618-24627
0.014
2
7mer
24001-24027
0.008
3
6mer
24538-24551
0.004
1
8mer
5908-5921
0.002
0
6mer
18726-18752
0.002
0
6mer
2943-2965
0.002
2
6mer
9394-9418
0.001
0
LOC90246
hsa-miR-654-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_026954.1
Biotype: lincRNA
Gene id: NR_026954.1 (gene)
Gene Name: LOC90246
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2449-2468
0.026
0
6mer
2221-2236
0.007
1
EMX2OS
hsa-miR-654-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5844-5852
0.016
0
7mer
3673-3694
0.005
2
7mer
1277-1295
0.004
Not Conserved
7mer
4740-4753
0.003
2
6mer
470-479
0.003
0
7mer
4358-4369
0.002
0
RP11-1080G15.1
hsa-miR-654-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520920
Biotype: lincRNA
Gene id: ENSG00000253557
Gene Name: RP11-1080G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-154
0.033
1
SNHG17
hsa-miR-654-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000424235
Biotype: retained_intron
Gene id: ENSG00000196756
Gene Name: SNHG17
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
686-695
0.033
2
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