LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-194N12.2
hsa-miR-654-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591343
Biotype: sense_intronic
Gene id: ENSG00000267222
Gene Name: RP11-194N12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-475
0.031
0
6mer
249-266
0.004
1
AP000356.2
hsa-miR-654-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438893
Biotype: sense_intronic
Gene id: ENSG00000230947
Gene Name: AP000356.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-47
0.035
1
RP11-1080G15.1
hsa-miR-654-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517949
Biotype: lincRNA
Gene id: ENSG00000253557
Gene Name: RP11-1080G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-94
0.034
1
MCM3AP-AS1
hsa-miR-654-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2215-2230
0.026
0
7mer
1633-1644
0.008
0
RP11-314D7.2
hsa-miR-654-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550723
Biotype: lincRNA
Gene id: ENSG00000258123
Gene Name: RP11-314D7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-303
0.034
1
THUMPD3-AS1
hsa-miR-654-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468186
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2605-2614
0.020
0
8mer
2363-2374
0.015
1
RP11-73K9.2
hsa-miR-654-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562919
Biotype: antisense
Gene id: ENSG00000260526
Gene Name: RP11-73K9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-199
0.026
Not Conserved
6mer
444-455
0.005
0
6mer
560-577
0.003
0
XLOC_000966
hsa-miR-654-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000095
Biotype: transcript isomorph
Gene id: XLOC_000966
Gene Name: XLOC_000966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-770
0.034
Not Conserved
SC22CB-109E1.1
hsa-miR-654-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3408-3427
0.007
1
7mer
3877-3897
0.006
1
7mer
8072-8080
0.006
1
8mer
1763-1770
0.006
0
8mer
7288-7305
0.004
0
6mer
2279-2292
0.003
1
6mer
4814-4828
0.001
1
6mer
4914-4926
0.001
0
6mer
2332-2358
0.001
0
AC015849.16
hsa-miR-654-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604647
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-295
0.034
1
XLOC_002227
hsa-miR-654-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004353
Biotype: transcript isomorph
Gene id: XLOC_002227
Gene Name: XLOC_002227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
284-310
0.017
0
6mer
98-121
0.005
0
7mer
739-744
0.005
1
6mer
1938-1954
0.003
1
6mer
2076-2101
0.003
0
6mer
1566-1586
0.002
1
KB-1836B5.4
hsa-miR-654-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607091
Biotype: lincRNA
Gene id: ENSG00000272128
Gene Name: KB-1836B5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-224
0.024
0
6mer
315-340
0.010
1
RP11-251G23.5
hsa-miR-654-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609827
Biotype: antisense
Gene id: ENSG00000272604
Gene Name: RP11-251G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1961-1985
0.034
1
CH17-264L24.1
hsa-miR-654-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7949-7960
0.018
0
7mer
6160-6173
0.004
0
6mer
150-175
0.003
Not Conserved
6mer
5033-5040
0.002
0
6mer
3735-3746
0.002
0
6mer
1969-1988
0.002
0
6mer
6304-6328
0.001
0
6mer
5926-5943
0.001
0
AC011294.3
hsa-miR-654-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451905
Biotype: lincRNA
Gene id: ENSG00000233539
Gene Name: AC011294.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1654-1662
0.017
0
7mer
962-978
0.010
1
6mer
1176-1202
0.003
0
6mer
681-704
0.003
0
RP11-407B7.1
hsa-miR-654-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597775
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-99
0.034
0
AC068831.16
hsa-miR-654-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620171
Biotype: lincRNA
Gene id: ENSG00000278514
Gene Name: AC068831.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-103
0.033
1
XLOC_001242
hsa-miR-654-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001854
Biotype: transcript isomorph
Gene id: XLOC_001242
Gene Name: XLOC_001242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-76
0.033
2
RP11-52L5.6
hsa-miR-654-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607269
Biotype: antisense
Gene id: ENSG00000271776
Gene Name: RP11-52L5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3171-3192
0.023
4
6mer
3201-3222
0.009
11
6mer
1444-1465
0.002
Not Conserved
CTD-2234B20.1
hsa-miR-654-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507674
Biotype: lincRNA
Gene id: ENSG00000249404
Gene Name: CTD-2234B20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-383
0.029
2
6mer
168-185
0.004
3
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