LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-654-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
NAALADL2-AS2
hsa-miR-654-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424690
Biotype: antisense
Gene id: ENSG00000226779
Gene Name: NAALADL2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-581
0.021
0
6mer
1007-1021
0.005
0
6mer
842-865
0.004
1
6mer
820-842
0.003
0
6mer
527-537
0.002
0
XIST
hsa-miR-654-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
515-525
0.005
1
7mer
7167-7194
0.005
0
8mer
5684-5693
0.003
Not Conserved
6mer
8681-8685
0.003
5
6mer
1299-1312
0.003
5
6mer
2617-2623
0.003
2
7mer
2417-2442
0.003
Not Conserved
6mer
12061-12080
0.002
1
6mer
14196-14216
0.002
0
6mer
12809-12835
0.002
1
6mer
11637-11663
0.001
0
6mer
11772-11785
0.001
0
6mer
1789-1811
0.001
2
6mer
12654-12673
0.001
1
6mer
11481-11506
0.001
1
RP11-540O11.8
hsa-miR-654-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000624853
Biotype: sense_intronic
Gene id: ENSG00000280036
Gene Name: RP11-540O11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1283-1289
0.035
0
6mer
755-773
0.001
1
XLOC_007193
hsa-miR-654-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015150
Biotype: transcript isomorph
Gene id: XLOC_007193
Gene Name: XLOC_007193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-596
0.036
0
ENTPD1-AS1
hsa-miR-654-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427846
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-27
0.031
0
6mer
423-440
0.005
0
MIR143HG
hsa-miR-654-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518014
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4807-4834
0.035
0
CYP4A22-AS1
hsa-miR-654-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444042
Biotype: lincRNA
Gene id: ENSG00000225506
Gene Name: CYP4A22-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
502-521
0.035
0
LINC00277
hsa-miR-654-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000435479
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-542
0.025
0
9mer
498-521
0.010
1
CTD-2291D10.4
hsa-miR-654-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594318
Biotype: lincRNA
Gene id: ENSG00000267886
Gene Name: CTD-2291D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
400-416
0.013
0
6mer
219-238
0.012
0
6mer
295-309
0.011
0
HIF1A-AS1
hsa-miR-654-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557544
Biotype: lincRNA
Gene id: ENSG00000258777
Gene Name: HIF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-107
0.019
2
7mer
130-155
0.016
3
CTA-246H3.12
hsa-miR-654-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
720-746
0.035
0
RP11-436I24.1
hsa-miR-654-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_110149.1
Biotype: antisense
Gene id: NR_110149.1 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
977-1002
0.015
3
7mer
1220-1238
0.013
1
6mer
164-177
0.007
2
THUMPD3-AS1
hsa-miR-654-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000524210
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1939-1948
0.020
0
8mer
1697-1708
0.015
1
ZMYM4-AS1
hsa-miR-654-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432683
Biotype: antisense
Gene id: ENSG00000227409
Gene Name: ZMYM4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-152
0.028
9
6mer
172-194
0.007
7
RP11-481J2.1
hsa-miR-654-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566019
Biotype: antisense
Gene id: ENSG00000261078
Gene Name: RP11-481J2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-182
0.035
1
XLOC_008274
hsa-miR-654-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5789-5797
0.026
1
6mer
1297-1311
0.004
1
6mer
5159-5183
0.003
0
6mer
4187-4211
0.002
1
RP11-677M14.7
hsa-miR-654-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529392
Biotype: antisense
Gene id: ENSG00000245498
Gene Name: RP11-677M14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
523-531
0.029
1
7mer
1413-1436
0.004
1
7mer
1478-1500
0.002
1
RP11-313C15.1
hsa-miR-654-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519427
Biotype: sense_intronic
Gene id: ENSG00000253726
Gene Name: RP11-313C15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1278-1284
0.028
0
6mer
1568-1587
0.007
2
LINC01224
hsa-miR-654-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1663-1682
0.012
1
6mer
1091-1103
0.007
1
6mer
1458-1473
0.007
1
6mer
546-562
0.004
0
6mer
1238-1251
0.003
0
6mer
1384-1400
0.002
0
LINC00889
hsa-miR-654-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026935.1
Biotype: lincRNA
Gene id: NR_026935.1 (gene)
Gene Name: LINC00889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2574-2583
0.022
1
7mer
505-510
0.010
0
6mer
1667-1690
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept