LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
SNHG1
hsa-miR-654-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540865
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-397
0.033
0
6mer
91-108
0.004
Not Conserved
XLOC_001412
hsa-miR-654-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002863
Biotype: transcript isomorph
Gene id: XLOC_001412
Gene Name: XLOC_001412
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-167
0.028
8
8mer
739-750
0.008
0
RASSF8-AS1
hsa-miR-654-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535436
Biotype: antisense
Gene id: ENSG00000246695
Gene Name: RASSF8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
829-835
0.036
1
LINC00710
hsa-miR-654-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450174
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-43
0.036
0
RP11-644F5.11
hsa-miR-654-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552576
Biotype: antisense
Gene id: ENSG00000258056
Gene Name: RP11-644F5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1352-1371
0.014
Not Conserved
7mer
1329-1353
0.010
0
6mer
1308-1334
0.006
3
6mer
1325-1345
0.006
1
XLOC_013278
hsa-miR-654-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
800-819
0.028
0
6mer
1071-1088
0.008
0
XLOC_001401
hsa-miR-654-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1686-1704
0.036
0
RP11-319G6.1
hsa-miR-654-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000514729
Biotype: antisense
Gene id: ENSG00000248932
Gene Name: RP11-319G6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-454
0.021
1
7mer
559-571
0.015
1
XLOC_004545
hsa-miR-654-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010086
Biotype: transcript isomorph
Gene id: XLOC_004545
Gene Name: XLOC_004545
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-199
0.028
0
6mer
1418-1443
0.008
2
SNHG17
hsa-miR-654-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000436764
Biotype: lincRNA
Gene id: ENSG00000196756
Gene Name: SNHG17
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
897-906
0.031
2
7mer
165-184
0.005
1
XLOC_003971
hsa-miR-654-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007371
Biotype: transcript isomorph
Gene id: XLOC_003971
Gene Name: XLOC_003971
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-252
0.020
1
7mer
3338-3354
0.007
1
7mer
765-775
0.007
1
6mer
1255-1277
0.002
0
6mer
1200-1221
0.001
1
LINC00994
hsa-miR-654-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485805
Biotype: lincRNA
Gene id: ENSG00000189196
Gene Name: LINC00994
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2001-2027
0.029
0
6mer
548-562
0.004
3
6mer
400-426
0.003
1
RP3-395M20.8
hsa-miR-654-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448624
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-273
0.036
1
RP11-386P4.1
hsa-miR-654-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578349
Biotype: lincRNA
Gene id: ENSG00000263688
Gene Name: RP11-386P4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-211
0.036
8
RP11-707A18.1
hsa-miR-654-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509932
Biotype: lincRNA
Gene id: ENSG00000250125
Gene Name: RP11-707A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-253
0.020
1
7mer
3339-3355
0.007
1
7mer
766-776
0.007
1
6mer
1256-1278
0.002
0
6mer
1201-1222
0.001
1
RP11-403B2.6
hsa-miR-654-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559621
Biotype: lincRNA
Gene id: ENSG00000259383
Gene Name: RP11-403B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-288
0.036
0
RP1-309I22.2
hsa-miR-654-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17396-17409
0.007
3
7mer
19553-19574
0.004
Not Conserved
7mer
11571-11593
0.003
2
7mer
19041-19066
0.003
2
7mer
16689-16707
0.003
1
6mer
19845-19850
0.002
Not Conserved
8mer
10464-10484
0.002
1
6mer
5669-5693
0.002
1
7mer
10607-10632
0.002
0
6mer
27641-27651
0.002
1
6mer
9723-9741
0.002
1
6mer
23695-23705
0.001
3
7mer
16744-16760
0.001
2
6mer
14658-14685
0.001
Not Conserved
6mer
16220-16234
0.001
0
6mer
9045-9068
0.001
0
RP11-20I20.2
hsa-miR-654-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510332
Biotype: antisense
Gene id: ENSG00000251652
Gene Name: RP11-20I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-256
0.036
1
RP11-636O21.1
hsa-miR-654-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585822
Biotype: lincRNA
Gene id: ENSG00000267413
Gene Name: RP11-636O21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
899-920
0.036
0
ZBTB11-AS1
hsa-miR-654-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609682
Biotype: antisense
Gene id: ENSG00000256628
Gene Name: ZBTB11-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
821-841
0.026
8
7mer
2623-2644
0.010
1
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