LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
AC003665.1
hsa-miR-654-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000411573
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-132
0.033
2
6mer
1114-1134
0.003
1
6mer
606-630
0.002
0
LOC101926935
hsa-miR-654-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3928-3948
0.022
0
7mer
3774-3799
0.008
0
6mer
5410-5431
0.007
0
XLOC_007118
hsa-miR-654-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015037
Biotype: transcript isomorph
Gene id: XLOC_007118
Gene Name: XLOC_007118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4140-4166
0.018
1
6mer
150-176
0.008
0
6mer
3281-3307
0.004
0
6mer
3018-3043
0.004
0
6mer
3777-3797
0.003
Not Conserved
SBF2-AS1
hsa-miR-654-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_036485.1
Biotype: antisense
Gene id: NR_036485.1 (gene)
Gene Name: SBF2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1862-1876
0.034
1
6mer
2328-2339
0.003
1
SNHG14
hsa-miR-654-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7763-7779
0.016
2
7mer
7724-7749
0.011
1
7mer
1967-1978
0.004
0
6mer
6994-7002
0.002
1
6mer
2918-2936
0.002
1
6mer
4221-4248
0.002
1
XLOC_002707
hsa-miR-654-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006096
Biotype: transcript isomorph
Gene id: XLOC_002707
Gene Name: XLOC_002707
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-188
0.037
1
XLOC_003897
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007417
Biotype: transcript isomorph
Gene id: XLOC_003897
Gene Name: XLOC_003897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1331-1341
0.032
7
6mer
681-686
0.004
2
LINC01090
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415357
Biotype: lincRNA
Gene id: ENSG00000231689
Gene Name: LINC01090
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-113
0.037
0
AC019048.1
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428379
Biotype: antisense
Gene id: ENSG00000223884
Gene Name: AC019048.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-139
0.033
0
6mer
178-202
0.003
0
SNHG17
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015366.4
Biotype: lincRNA
Gene id: NR_015366.4 (gene)
Gene Name: SNHG17
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
983-992
0.032
2
7mer
133-152
0.005
1
LINC01356
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000401018
Biotype: lincRNA
Gene id: ENSG00000215866
Gene Name: LINC01356
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-680
0.037
Not Conserved
RP11-5P4.1
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425352
Biotype: lincRNA
Gene id: ENSG00000229537
Gene Name: RP11-5P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
66-74
0.037
1
RP11-576E20.1
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509964
Biotype: lincRNA
Gene id: ENSG00000250819
Gene Name: RP11-576E20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1332-1342
0.032
7
6mer
682-687
0.005
2
PCAT14
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_109832.1
Biotype: lincRNA
Gene id: NR_109832.1 (gene)
Gene Name: PCAT14
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-531
0.037
0
XLOC_011448
hsa-miR-654-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9404-9419
0.009
2
7mer
9699-9712
0.007
3
6mer
4395-4404
0.005
12
6mer
9894-9907
0.003
1
6mer
4571-4595
0.003
2
6mer
5108-5126
0.002
4
6mer
2232-2255
0.002
3
6mer
6971-6996
0.001
1
6mer
8030-8053
0.001
Not Conserved
6mer
5051-5076
0.001
1
6mer
5036-5057
0.001
1
6mer
5086-5110
0.001
1
RP11-873E20.1
hsa-miR-654-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590983
Biotype: lincRNA
Gene id: ENSG00000267397
Gene Name: RP11-873E20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1457-1479
0.031
0
6mer
867-889
0.005
1
LINC00570
hsa-miR-654-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453100
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-273
0.037
0
LINC00570
hsa-miR-654-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432665
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-244
0.036
0
IL12A-AS1
hsa-miR-654-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497452
Biotype: antisense
Gene id: ENSG00000244040
Gene Name: IL12A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2169-2190
0.030
Not Conserved
7mer
1914-1932
0.007
0
RP11-54H7.4
hsa-miR-654-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618966
Biotype: lincRNA
Gene id: ENSG00000275216
Gene Name: RP11-54H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-146
0.031
0
8mer
1743-1762
0.004
0
6mer
2312-2330
0.002
0
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