LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-327J17.2
hsa-miR-654-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558449
Biotype: lincRNA
Gene id: ENSG00000259359
Gene Name: RP11-327J17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-549
0.033
1
6mer
211-233
0.005
1
RP13-20L14.1
hsa-miR-654-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566971
Biotype: lincRNA
Gene id: ENSG00000260011
Gene Name: RP13-20L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-325
0.038
1
RP11-23D24.2
hsa-miR-654-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492569
Biotype: lincRNA
Gene id: ENSG00000238755
Gene Name: RP11-23D24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1834-1849
0.020
2
6mer
238-242
0.009
3
7mer
451-461
0.009
1
AC109642.1
hsa-miR-654-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421976
Biotype: lincRNA
Gene id: ENSG00000235997
Gene Name: AC109642.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-130
0.029
8
8mer
556-567
0.009
0
AC114776.3
hsa-miR-654-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
570-593
0.012
1
7mer
1207-1233
0.011
0
6mer
3214-3231
0.006
1
7mer
2000-2005
0.006
0
6mer
1787-1799
0.001
Not Conserved
6mer
2530-2556
0.001
Not Conserved
XLOC_005821
hsa-miR-654-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012265
Biotype: transcript isomorph
Gene id: XLOC_005821
Gene Name: XLOC_005821
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-198
0.015
3
8mer
1471-1482
0.011
0
6mer
1592-1603
0.007
4
6mer
917-929
0.004
2
XLOC_003706
hsa-miR-654-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008264
Biotype: transcript isomorph
Gene id: XLOC_003706
Gene Name: XLOC_003706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
873-881
0.032
0
6mer
1210-1219
0.006
0
RP11-512C24.3
hsa-miR-654-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000325811
Biotype: lincRNA
Gene id: ENSG00000177596
Gene Name: RP11-512C24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-59
0.028
4
7mer
1895-1907
0.009
2
RP11-510M2.2
hsa-miR-654-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500612
Biotype: antisense
Gene id: ENSG00000247324
Gene Name: RP11-510M2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
939-948
0.019
1
7mer
2296-2308
0.019
2
RP11-299J3.8
hsa-miR-654-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608346
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-515
0.026
0
6mer
551-555
0.012
3
XLOC_012575
hsa-miR-654-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025765
Biotype: transcript isomorph
Gene id: XLOC_012575
Gene Name: XLOC_012575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-500
0.028
0
7mer
2476-2497
0.007
0
6mer
693-713
0.003
0
LL21NC02-1C16.2
hsa-miR-654-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609953
Biotype: antisense
Gene id: ENSG00000272825
Gene Name: LL21NC02-1C16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
613-618
0.032
1
6mer
408-435
0.006
0
CTD-2643K12.3
hsa-miR-654-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558874
Biotype: lincRNA
Gene id: ENSG00000259724
Gene Name: CTD-2643K12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-184
0.027
0
6mer
5-11
0.005
0
6mer
1891-1911
0.003
2
7mer
1635-1652
0.003
0
XLOC_010811
hsa-miR-654-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022976
Biotype: transcript isomorph
Gene id: XLOC_010811
Gene Name: XLOC_010811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1611-1620
0.022
2
7mer
2025-2041
0.012
0
6mer
1638-1643
0.004
3
RP11-5P4.1
hsa-miR-654-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420659
Biotype: lincRNA
Gene id: ENSG00000229537
Gene Name: RP11-5P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
66-74
0.037
1
RP11-391M1.4
hsa-miR-654-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607057
Biotype: lincRNA
Gene id: ENSG00000272452
Gene Name: RP11-391M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
609-634
0.026
1
6mer
1861-1879
0.006
1
6mer
1300-1305
0.005
1
RP11-5P4.1
hsa-miR-654-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420285
Biotype: lincRNA
Gene id: ENSG00000229537
Gene Name: RP11-5P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
66-74
0.037
1
RP11-44F14.8
hsa-miR-654-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1944-1959
0.023
0
6mer
428-437
0.015
1
AC007161.5
hsa-miR-654-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000599208
Biotype: lincRNA
Gene id: ENSG00000234718
Gene Name: AC007161.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-432
0.020
4
8mer
607-618
0.017
1
PROX1-AS1
hsa-miR-654-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-844
0.020
1
8mer
5094-5109
0.017
1
6mer
3467-3493
0.001
1
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