LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
XLOC_006529
hsa-miR-654-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013891
Biotype: transcript isomorph
Gene id: XLOC_006529
Gene Name: XLOC_006529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4676-4696
0.013
0
7mer
4697-4716
0.011
0
7mer
1722-1734
0.006
1
6mer
335-356
0.006
2
6mer
1118-1143
0.002
1
6mer
1518-1543
0.002
1
RP13-452N2.1
hsa-miR-654-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000462083
Biotype: antisense
Gene id: ENSG00000242048
Gene Name: RP13-452N2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2297-2322
0.039
1
XLOC_004067
hsa-miR-654-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008571
Biotype: transcript isomorph
Gene id: XLOC_004067
Gene Name: XLOC_004067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-18
0.034
0
6mer
228-252
0.006
1
XLOC_013553
hsa-miR-654-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2065-2075
0.011
0
6mer
860-869
0.007
1
7mer
1959-1969
0.007
1
7mer
3175-3202
0.005
0
6mer
6385-6411
0.005
0
6mer
1784-1811
0.004
1
XLOC_006016
hsa-miR-654-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013381
Biotype: transcript isomorph
Gene id: XLOC_006016
Gene Name: XLOC_006016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-295
0.035
8
6mer
1054-1079
0.004
2
RP11-94L15.2
hsa-miR-654-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-565
0.033
7
6mer
1163-1183
0.004
4
6mer
3548-3552
0.002
3
XLOC_011484
hsa-miR-654-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-252
0.035
0
7mer
747-768
0.004
Not Conserved
RP1-60O19.1
hsa-miR-654-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436659
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1022-1045
0.033
1
6mer
1301-1328
0.005
1
CTD-3116E22.8
hsa-miR-654-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000613300
Biotype: lincRNA
Gene id: ENSG00000277587
Gene Name: CTD-3116E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-130
0.039
0
ZNF571-AS1
hsa-miR-654-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_038247.1
Biotype: sense
Gene id: NR_038247.1 (gene)
Gene Name: ZNF571-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2564-2570
0.025
0
7mer
2533-2557
0.014
1
ZNF571-AS1
hsa-miR-654-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585578
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2566-2572
0.025
0
7mer
2535-2559
0.014
1
RP11-205M3.3
hsa-miR-654-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508313
Biotype: lincRNA
Gene id: ENSG00000248319
Gene Name: RP11-205M3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4051-4065
0.033
2
6mer
757-769
0.004
3
6mer
1797-1821
0.002
1
RP11-362A1.1
hsa-miR-654-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550506
Biotype: lincRNA
Gene id: ENSG00000257747
Gene Name: RP11-362A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-203
0.034
1
6mer
1071-1090
0.005
1
ZNF571-AS1
hsa-miR-654-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586139
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2473-2479
0.025
0
7mer
2442-2466
0.014
1
ZNF571-AS1
hsa-miR-654-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590838
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2300-2306
0.025
0
7mer
2269-2293
0.014
1
RP11-541F9.2
hsa-miR-654-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430776
Biotype: lincRNA
Gene id: ENSG00000228215
Gene Name: RP11-541F9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1612-1623
0.030
0
6mer
1505-1521
0.004
1
6mer
330-343
0.004
0
RP1-60O19.1
hsa-miR-654-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000428750
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
434-457
0.033
1
6mer
713-740
0.005
1
CTC-459F4.1
hsa-miR-654-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562493
Biotype: lincRNA
Gene id: ENSG00000261770
Gene Name: CTC-459F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3576-3588
0.009
0
7mer
869-882
0.007
0
6mer
433-452
0.005
0
7mer
1344-1366
0.004
0
6mer
2722-2743
0.003
0
7mer
2021-2035
0.003
0
7mer
1042-1057
0.003
0
6mer
1147-1161
0.003
0
6mer
1450-1460
0.002
0
AC018742.1
hsa-miR-654-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435682
Biotype: lincRNA
Gene id: ENSG00000229621
Gene Name: AC018742.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1144-1166
0.038
2
RP11-449D8.1
hsa-miR-654-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583558
Biotype: lincRNA
Gene id: ENSG00000265485
Gene Name: RP11-449D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-142
0.038
10
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