LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
CTD-2184D3.3
hsa-miR-654-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558343
Biotype: lincRNA
Gene id: ENSG00000259178
Gene Name: CTD-2184D3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-119
0.021
1
8mer
177-204
0.020
1
RP11-480D4.6
hsa-miR-654-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607691
Biotype: lincRNA
Gene id: ENSG00000272049
Gene Name: RP11-480D4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-72
0.041
1
XLOC_010651
hsa-miR-654-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2520-2529
0.011
0
7mer
838-850
0.010
1
6mer
345-362
0.006
1
7mer
2125-2141
0.005
0
6mer
310-320
0.005
1
6mer
1621-1641
0.003
0
LINC00550
hsa-miR-654-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2523-2532
0.011
0
7mer
841-853
0.010
1
6mer
348-365
0.006
1
7mer
2128-2144
0.005
0
6mer
313-323
0.005
1
6mer
1624-1644
0.003
0
CTD-2308B18.1
hsa-miR-654-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513422
Biotype: lincRNA
Gene id: ENSG00000251214
Gene Name: CTD-2308B18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-455
0.041
6
FAM66D
hsa-miR-654-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027425.1
Biotype: antisense
Gene id: NR_027425.1 (gene)
Gene Name: FAM66D
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
888-911
0.041
1
RPL34-AS1
hsa-miR-654-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507248
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3277-3297
0.028
1
7mer
101-127
0.013
1
RP11-1260E13.4
hsa-miR-654-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574432
Biotype: processed_transcript
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-647
0.014
0
8mer
751-771
0.014
0
8mer
689-709
0.013
0
XLOC_006126
hsa-miR-654-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
837-853
0.018
0
6mer
694-706
0.016
0
6mer
136-153
0.004
Not Conserved
6mer
272-295
0.003
Not Conserved
RP11-1260E13.4
hsa-miR-654-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570711
Biotype: antisense
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-643
0.014
0
8mer
747-767
0.014
0
8mer
685-705
0.013
0
SNHG1
hsa-miR-654-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000535689
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-116
0.040
0
RP11-325L7.1
hsa-miR-654-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500267
Biotype: antisense
Gene id: ENSG00000246323
Gene Name: RP11-325L7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
807-827
0.022
1
7mer
869-889
0.015
1
6mer
586-598
0.003
1
RP11-81H3.2
hsa-miR-654-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551210
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-162
0.040
1
FLJ36777
hsa-miR-654-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501888
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1987-2007
0.040
1
LINC01279
hsa-miR-654-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610103
Biotype: lincRNA
Gene id: ENSG00000272761
Gene Name: LINC01279
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-243
0.031
0
7mer
3451-3471
0.005
Not Conserved
7mer
3049-3058
0.002
1
6mer
1946-1967
0.002
0
6mer
3108-3135
0.001
0
XLOC_008748
hsa-miR-654-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018451
Biotype: transcript isomorph
Gene id: XLOC_008748
Gene Name: XLOC_008748
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-83
0.040
1
RP11-13N13.6
hsa-miR-654-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578583
Biotype: antisense
Gene id: ENSG00000265656
Gene Name: RP11-13N13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-108
0.040
5
PWRN1
hsa-miR-654-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569908
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
467-481
0.015
1
6mer
1059-1077
0.015
1
6mer
1384-1393
0.009
0
XLOC_007192
hsa-miR-654-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015149
Biotype: transcript isomorph
Gene id: XLOC_007192
Gene Name: XLOC_007192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-28
0.036
1
6mer
875-886
0.004
1
CTC-559E9.6
hsa-miR-654-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589657
Biotype: antisense
Gene id: ENSG00000267419
Gene Name: CTC-559E9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-460
0.040
0
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