LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
RP11-490G2.2
hsa-miR-520h
0.906
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561881
Biotype: lincRNA
Gene id: ENSG00000259946
Gene Name: RP11-490G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1715-1735
0.041
3
6mer
1725-1743
0.007
3
AC003986.6
hsa-miR-520h
0.905
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419944
Biotype: antisense
Gene id: ENSG00000232821
Gene Name: AC003986.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-244
0.035
9
7mer
525-530
0.008
4
6mer
323-332
0.004
3
AGAP11
hsa-miR-520h
0.905
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-181
0.035
1
6mer
792-812
0.004
1
8mer
1961-1983
0.002
Not Conserved
6mer
2469-2488
0.002
1
6mer
808-824
0.002
1
6mer
1146-1165
0.002
0
6mer
2440-2452
0.001
0
RP11-634B7.4
hsa-miR-520h
0.905
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-479
0.020
0
6mer
89-108
0.016
1
6mer
22-45
0.011
0
RP11-216M21.7
hsa-miR-520h
0.904
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-755
0.047
0
RP11-48B3.4
hsa-miR-520h
0.904
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569134
Biotype: lincRNA
Gene id: ENSG00000260317
Gene Name: RP11-48B3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1687-1710
0.040
2
6mer
1068-1088
0.004
1
6mer
599-614
0.003
0
RP5-1014D13.2
hsa-miR-520h
0.904
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4523-4549
0.005
1
8mer
9511-9533
0.003
0
7mer
6890-6907
0.003
Not Conserved
6mer
19393-19410
0.003
0
7mer
6265-6284
0.003
0
8mer
10162-10179
0.003
0
8mer
7505-7524
0.002
0
8mer
11203-11220
0.002
0
8mer
3094-3111
0.002
0
7mer
9784-9801
0.002
0
8mer
7171-7192
0.002
0
8mer
6606-6613
0.002
0
8mer
5900-5917
0.002
0
6mer
12236-12259
0.002
2
6mer
14764-14783
0.002
0
6mer
17166-17186
0.002
2
6mer
2712-2738
0.002
0
6mer
16097-16118
0.001
0
6mer
16707-16731
0.001
0
6mer
11765-11790
0.001
1
6mer
3511-3529
0.001
Not Conserved
FLJ37035
hsa-miR-520h
0.904
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000528844
Biotype: lincRNA
Gene id: ENSG00000224023
Gene Name: FLJ37035
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-482
0.026
5
6mer
630-652
0.016
8
6mer
5-32
0.005
2
RP11-175O19.4
hsa-miR-520h
0.903
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3186-3208
0.022
10
7mer
894-908
0.006
5
6mer
821-839
0.005
5
6mer
988-1001
0.005
7
7mer
1962-1986
0.004
4
6mer
432-448
0.003
0
6mer
2421-2447
0.002
1
RP4-614O4.12
hsa-miR-520h
0.903
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000594413
Biotype: lincRNA
Gene id: ENSG00000269202
Gene Name: RP4-614O4.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
145-161
0.022
1
6mer
935-951
0.015
1
6mer
725-744
0.011
1
AC012593.1
hsa-miR-520h
0.902
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
263-288
0.017
1
6mer
590-602
0.016
1
6mer
314-340
0.014
1
XLOC_011677
hsa-miR-520h
0.902
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024285
Biotype: transcript isomorph
Gene id: XLOC_011677
Gene Name: XLOC_011677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4584-4602
0.011
1
8mer
4989-5006
0.010
1
8mer
321-337
0.009
1
8mer
1603-1609
0.009
1
8mer
4018-4035
0.004
1
8mer
1889-1910
0.003
1
6mer
3573-3597
0.001
0
bP-21264C1.2
hsa-miR-520h
0.901
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623409
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-129
0.047
0
RP11-116D17.2
hsa-miR-520h
0.901
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546696
Biotype: lincRNA
Gene id: ENSG00000257519
Gene Name: RP11-116D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-53
0.047
3
LINC00839
hsa-miR-520h
0.899
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1426-1439
0.016
1
6mer
124-140
0.014
1
6mer
1283-1298
0.012
1
6mer
391-406
0.004
0
FLJ37035
hsa-miR-520h
0.896
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_033847.1
Biotype: lincRNA
Gene id: NR_033847.1 (gene)
Gene Name: FLJ37035
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2223-2229
0.029
5
6mer
2492-2514
0.017
8
RP11-485G4.2
hsa-miR-520h
0.895
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608374
Biotype: lincRNA
Gene id: ENSG00000272565
Gene Name: RP11-485G4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3967-3992
0.013
2
6mer
225-248
0.009
6
7mer
3953-3972
0.005
1
7mer
1283-1307
0.005
1
8mer
3457-3474
0.004
1
8mer
685-710
0.004
0
8mer
3837-3853
0.003
0
8mer
2582-2599
0.003
1
LINC00839
hsa-miR-520h
0.894
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1427-1440
0.017
1
6mer
209-225
0.012
1
6mer
1284-1299
0.012
1
6mer
392-407
0.005
0
XLOC_012839
hsa-miR-520h
0.893
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026518
Biotype: transcript isomorph
Gene id: XLOC_012839
Gene Name: XLOC_012839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-81
0.034
0
6mer
363-372
0.005
1
6mer
5502-5525
0.003
2
6mer
2320-2347
0.002
1
6mer
3626-3647
0.002
0
SIK3-IT1
hsa-miR-520h
0.893
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000454832
Biotype: sense_intronic
Gene id: ENSG00000231865
Gene Name: SIK3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
330-353
0.045
7
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