LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
CTA-941F9.10
hsa-miR-520h
0.940
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1041-1065
0.009
Not Conserved
7mer
22648-22674
0.007
3
8mer
10387-10393
0.006
1
8mer
6471-6479
0.005
1
7mer
17991-18014
0.004
3
8mer
19116-19129
0.004
1
7mer
16375-16393
0.004
0
6mer
21823-21840
0.002
1
6mer
7304-7325
0.002
1
6mer
5032-5045
0.002
0
6mer
904-921
0.002
Not Conserved
6mer
11290-11305
0.002
1
6mer
5447-5470
0.002
1
6mer
17436-17456
0.002
1
6mer
4264-4289
0.002
0
6mer
10465-10476
0.001
1
ZNF561-AS1
hsa-miR-520h
0.940
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586614
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-130
0.056
1
AC096772.6
hsa-miR-520h
0.940
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-289
0.027
1
8mer
1011-1017
0.023
0
6mer
717-739
0.003
0
6mer
689-705
0.002
0
NEAT1
hsa-miR-520h
0.939
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9058-9084
0.010
0
7mer
16849-16870
0.006
1
8mer
19822-19842
0.005
1
8mer
16624-16643
0.003
0
7mer
5342-5358
0.003
1
7mer
10043-10061
0.003
1
8mer+wobble
4006-4024
0.003
2
6mer
21182-21203
0.003
3
6mer
3011-3037
0.002
1
6mer
15753-15768
0.002
1
6mer
12259-12286
0.002
3
6mer
14881-14901
0.002
0
7mer
15764-15786
0.002
1
6mer
21889-21910
0.002
0
6mer
3790-3794
0.002
0
6mer
17067-17085
0.001
0
6mer
18212-18227
0.001
1
6mer
6614-6636
0.001
0
6mer
5675-5702
0.001
0
6mer
4427-4446
0.001
0
6mer
18231-18250
0.001
1
ZNF561-AS1
hsa-miR-520h
0.939
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588765
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-132
0.055
1
TTTY16
hsa-miR-520h
0.939
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000437686
Biotype: lincRNA
Gene id: ENSG00000225520
Gene Name: TTTY16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-75
0.055
0
XLOC_004804
hsa-miR-520h
0.937
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-262
0.023
1
9mer
3019-3042
0.011
1
8mer
937-954
0.010
0
8mer
1802-1822
0.004
0
6mer
3591-3608
0.004
1
6mer
1516-1534
0.002
0
TTTY10
hsa-miR-520h
0.937
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
591-596
0.021
0
6mer
1406-1427
0.019
0
6mer
1215-1234
0.015
0
TMEM75
hsa-miR-520h
0.934
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103558.1
Biotype: lincRNA
Gene id: NR_103558.1 (gene)
Gene Name: TMEM75
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-150
0.029
0
6mer
1605-1618
0.006
1
7mer
1381-1404
0.004
0
6mer
2-27
0.003
0
6mer
2116-2143
0.003
Not Conserved
6mer
166-192
0.003
0
6mer
1420-1443
0.003
0
6mer
1258-1283
0.002
0
XLOC_010279
hsa-miR-520h
0.933
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1521-1538
0.029
0
8mer
1215-1232
0.025
0
LOC100190986
hsa-miR-520h
0.932
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-271
0.054
0
AC105339.1
hsa-miR-520h
0.931
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440089
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-489
0.026
6
8mer
171-184
0.023
4
6mer
958-980
0.004
1
XLOC_006964
hsa-miR-520h
0.931
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014550
Biotype: transcript isomorph
Gene id: XLOC_006964
Gene Name: XLOC_006964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-271
0.053
1
RP11-266K4.13
hsa-miR-520h
0.929
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-370
0.024
1
7mer
39-60
0.021
0
6mer
1200-1209
0.008
0
CTD-2095E4.5
hsa-miR-520h
0.928
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613639
Biotype: lincRNA
Gene id: ENSG00000277511
Gene Name: CTD-2095E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
815-829
0.053
0
LINC00948
hsa-miR-520h
0.928
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414264
Biotype: lincRNA
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-308
0.025
4
6mer
107-133
0.015
6
6mer
358-382
0.013
8
XLOC_007324
hsa-miR-520h
0.927
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
211-226
0.020
1
6mer
1174-1197
0.016
1
6mer
959-973
0.011
1
6mer
752-775
0.005
0
XLOC_004451
hsa-miR-520h
0.926
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009438
Biotype: transcript isomorph
Gene id: XLOC_004451
Gene Name: XLOC_004451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
239-259
0.021
2
8mer
866-881
0.018
0
6mer
981-1006
0.014
2
XLOC_008826
hsa-miR-520h
0.925
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
209-224
0.011
1
7mer
787-805
0.010
1
6mer
4239-4252
0.006
0
6mer
699-719
0.005
1
6mer
979-1002
0.005
1
7mer
3484-3504
0.005
Not Conserved
6mer
3233-3246
0.003
0
6mer
1569-1589
0.003
1
6mer
1257-1283
0.003
0
XLOC_005501
hsa-miR-520h
0.924
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1771-1792
0.051
1
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