LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
MIR6818
hsa-miR-520h
0.953
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13653-13668
0.005
Not Conserved
8mer
5130-5151
0.005
1
7mer
42323-42346
0.005
0
6mer
9603-9615
0.004
13
6mer
15619-15632
0.004
5
8mer
4948-4969
0.003
1
8mer
18048-18065
0.003
1
7mer
4492-4513
0.003
1
8mer
11895-11912
0.003
1
8mer
10538-10555
0.002
0
8mer
27872-27892
0.002
0
6mer
23982-23997
0.002
5
7mer
25680-25697
0.002
1
6mer
12174-12189
0.002
0
6mer
15409-15430
0.002
1
6mer
7473-7484
0.002
0
6mer
20644-20663
0.002
1
6mer
7014-7040
0.002
1
7mer
46477-46482
0.002
0
6mer
22710-22730
0.002
1
6mer
18398-18425
0.001
1
6mer
46600-46616
0.001
1
6mer
36792-36817
0.001
0
6mer
7467-7484
0.001
1
GABPB1-AS1
hsa-miR-520h
0.953
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15501-15518
0.009
1
8mer
8144-8166
0.007
Not Conserved
7mer
5516-5533
0.006
3
6mer
283-301
0.004
1
6mer
15933-15955
0.004
2
7mer
11912-11927
0.003
0
8mer
13798-13823
0.003
1
9mer
14706-14724
0.003
1
8mer
12599-12616
0.003
1
6mer
7712-7717
0.003
3
8mer
11192-11213
0.003
0
8mer
13501-13518
0.002
0
8mer
2016-2033
0.002
0
6mer
1125-1146
0.002
Not Conserved
6mer
4340-4362
0.002
1
6mer
6953-6971
0.002
0
7mer
12016-12033
0.002
1
6mer
8273-8297
0.002
3
CTD-2540L5.6
hsa-miR-520h
0.952
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500016
Biotype: lincRNA
Gene id: ENSG00000245466
Gene Name: CTD-2540L5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-105
0.029
2
7mer
455-478
0.010
1
8mer
899-924
0.009
0
6mer
547-570
0.006
3
6mer
2340-2360
0.006
3
XLOC_011193
hsa-miR-520h
0.951
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023891
Biotype: transcript isomorph
Gene id: XLOC_011193
Gene Name: XLOC_011193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-210
0.059
1
XLOC_007078
hsa-miR-520h
0.950
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-55
0.037
1
7mer
322-343
0.022
0
CTA-342B11.3
hsa-miR-520h
0.948
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
461-473
0.006
1
7mer
23329-23345
0.006
Not Conserved
8mer
22124-22143
0.005
Not Conserved
8mer
1301-1320
0.004
1
8mer
6415-6434
0.004
1
7mer
13429-13441
0.003
1
7mer
2697-2721
0.003
2
8mer
10236-10253
0.003
1
8mer
7908-7925
0.003
1
8mer
22848-22860
0.003
Not Conserved
8mer
19584-19603
0.002
0
6mer
4307-4334
0.002
1
6mer
21034-21050
0.002
0
6mer
11173-11195
0.002
1
7mer
20437-20457
0.002
0
6mer
4761-4785
0.002
1
6mer
13742-13761
0.001
1
6mer
9631-9657
0.001
0
6mer
8782-8800
0.001
0
6mer
20123-20147
0.001
0
6mer
22248-22268
0.001
Not Conserved
6mer
8815-8834
0.001
1
6mer
21059-21069
0.001
0
AC004951.6
hsa-miR-520h
0.948
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-271
0.058
0
ZNF561-AS1
hsa-miR-520h
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-913
0.032
0
7mer
335-355
0.026
0
KB-1183D5.18
hsa-miR-520h
0.946
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624642
Biotype: lincRNA
Gene id: ENSG00000279920
Gene Name: KB-1183D5.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-57
0.057
0
RP11-309H21.3
hsa-miR-520h
0.944
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1319-1336
0.024
0
6mer
460-485
0.013
0
8mer+wobble
1135-1157
0.011
0
6mer
659-672
0.010
0
LINC00421
hsa-miR-520h
0.943
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-121
0.057
0
XLOC_010290
hsa-miR-520h
0.943
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-121
0.057
0
RP11-473M20.16
hsa-miR-520h
0.943
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570843
Biotype: lincRNA
Gene id: ENSG00000261889
Gene Name: RP11-473M20.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
454-463
0.027
1
8mer
174-191
0.025
1
6mer
515-536
0.005
0
LL22NC03-86G7.1
hsa-miR-520h
0.943
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
479-499
0.007
0
8mer
15825-15839
0.006
1
8mer
37486-37506
0.006
1
6mer
37774-37801
0.004
0
8mer
4361-4380
0.003
0
8mer
32901-32919
0.003
4
7mer
8578-8594
0.003
Not Conserved
8mer
29875-29900
0.003
1
8mer
34298-34320
0.003
1
7mer
3830-3845
0.002
Not Conserved
8mer
24952-24971
0.002
2
6mer
1185-1191
0.002
1
6mer
7918-7935
0.002
1
6mer
27906-27925
0.002
2
6mer
36895-36912
0.002
0
7mer
33324-33344
0.002
0
6mer
7599-7620
0.001
1
6mer
26818-26835
0.001
0
6mer
26869-26893
0.001
2
MIR4534
hsa-miR-520h
0.942
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
37710-37737
0.003
8
6mer
19678-19690
0.003
7
6mer
681-702
0.003
1
8mer
27630-27647
0.003
1
6mer
20710-20727
0.003
7
8mer
21683-21700
0.003
1
8mer
40032-40057
0.002
1
6mer
12852-12878
0.002
0
6mer
8422-8440
0.002
4
6mer
53166-53190
0.002
1
8mer
6928-6945
0.002
1
8mer
39713-39730
0.002
0
8mer
13619-13637
0.002
0
7mer
7170-7183
0.002
0
8mer
45378-45396
0.002
0
6mer
22539-22550
0.002
1
8mer
2598-2619
0.002
0
6mer
2998-3008
0.002
0
8mer
2288-2313
0.002
0
6mer
33909-33924
0.002
1
6mer
11755-11766
0.002
1
6mer
26745-26762
0.002
1
6mer
27986-28012
0.001
0
6mer
31481-31501
0.001
1
6mer
1317-1341
0.001
1
6mer
44825-44852
0.001
1
6mer
43340-43345
0.001
1
6mer
51366-51390
0.001
1
6mer
8882-8902
0.001
0
RP11-481J2.1
hsa-miR-520h
0.942
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566019
Biotype: antisense
Gene id: ENSG00000261078
Gene Name: RP11-481J2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
282-303
0.056
1
PWARSN
hsa-miR-520h
0.942
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-177
0.027
2
6mer
115-141
0.014
3
8mer
1139-1156
0.008
1
8mer
1539-1556
0.007
0
LINC00846
hsa-miR-520h
0.942
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-299
0.056
1
RP4-547N15.3
hsa-miR-520h
0.941
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621423
Biotype: sense_intronic
Gene id: ENSG00000275678
Gene Name: RP4-547N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-414
0.018
1
8mer
693-710
0.015
1
7mer
968-991
0.012
1
6mer
1656-1660
0.006
2
6mer
1128-1133
0.003
1
6mer
940-964
0.002
1
RP11-356C4.3
hsa-miR-520h
0.941
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562203
Biotype: lincRNA
Gene id: ENSG00000260507
Gene Name: RP11-356C4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-349
0.056
0
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