LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
XLOC_011484
hsa-miR-520h
0.704
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1208-1225
0.025
0
RP11-218E20.5
hsa-miR-520h
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557343
Biotype: antisense
Gene id: ENSG00000258745
Gene Name: RP11-218E20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-37
0.025
4
RP11-174G6.5
hsa-miR-520h
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562691
Biotype: sense_overlapping
Gene id: ENSG00000261324
Gene Name: RP11-174G6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4987-5004
0.007
0
6mer
163-180
0.007
1
6mer
5197-5212
0.005
0
6mer
1683-1700
0.003
0
8mer
2629-2646
0.002
Not Conserved
6mer
3275-3293
0.002
1
XLOC_005703
hsa-miR-520h
0.703
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012157
Biotype: transcript isomorph
Gene id: XLOC_005703
Gene Name: XLOC_005703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
74-100
0.018
1
6mer
189-212
0.007
2
KCTD21-AS1
hsa-miR-520h
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500113
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1424-1448
0.014
0
8mer
1137-1155
0.007
1
6mer
938-951
0.004
1
XLOC_009544
hsa-miR-520h
0.703
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019750
Biotype: transcript isomorph
Gene id: XLOC_009544
Gene Name: XLOC_009544
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
219-227
0.005
1
6mer
65-90
0.005
1
6mer
970-996
0.004
2
6mer
345-370
0.004
0
7mer
2670-2690
0.003
0
6mer
2250-2272
0.002
1
6mer
2148-2169
0.001
0
APTR
hsa-miR-520h
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440088
Biotype: lincRNA
Gene id: ENSG00000214293
Gene Name: APTR
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-219
0.025
0
XLOC_008535
hsa-miR-520h
0.702
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018255
Biotype: transcript isomorph
Gene id: XLOC_008535
Gene Name: XLOC_008535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2674-2692
0.015
6
6mer
2246-2259
0.006
4
6mer
724-746
0.004
1
RP11-323I15.5
hsa-miR-520h
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559246
Biotype: lincRNA
Gene id: ENSG00000259336
Gene Name: RP11-323I15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
631-647
0.012
0
7mer
1037-1054
0.012
1
XLOC_013045
hsa-miR-520h
0.702
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026786
Biotype: transcript isomorph
Gene id: XLOC_013045
Gene Name: XLOC_013045
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1070-1088
0.009
0
6mer
5745-5764
0.006
0
6mer
5774-5799
0.004
0
7mer
1125-1138
0.002
0
6mer
4549-4556
0.001
0
6mer
1221-1241
0.001
0
6mer
2094-2108
0.001
Not Conserved
RNF217-AS1
hsa-miR-520h
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000439075
Biotype: antisense
Gene id: ENSG00000236548
Gene Name: RNF217-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
596-617
0.011
0
6mer
155-160
0.006
1
6mer
257-271
0.005
2
6mer
3786-3800
0.003
1
LINC01375
hsa-miR-520h
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428485
Biotype: lincRNA
Gene id: ENSG00000226159
Gene Name: LINC01375
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
658-664
0.010
1
7mer
1534-1550
0.008
2
7mer
1442-1454
0.003
1
6mer
1495-1508
0.003
1
CTA-292E10.6
hsa-miR-520h
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000422972
Biotype: antisense
Gene id: ENSG00000226471
Gene Name: CTA-292E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-156
0.019
1
6mer
351-369
0.006
0
XLOC_010622
hsa-miR-520h
0.701
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021656
Biotype: transcript isomorph
Gene id: XLOC_010622
Gene Name: XLOC_010622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4704-4724
0.010
1
8mer
366-383
0.005
0
8mer
4114-4131
0.004
1
7mer
2683-2704
0.003
1
6mer
2903-2926
0.002
0
6mer
2139-2156
0.001
0
KB-1674E1.1
hsa-miR-520h
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623776
Biotype: sense_intronic
Gene id: ENSG00000280413
Gene Name: KB-1674E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-466
0.008
1
6mer
4726-4751
0.005
1
8mer
2527-2551
0.005
1
6mer
4580-4596
0.005
0
6mer
2116-2137
0.002
0
RP11-20I23.11
hsa-miR-520h
0.701
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569220
Biotype: sense_intronic
Gene id: ENSG00000261288
Gene Name: RP11-20I23.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
498-511
0.012
2
8mer
310-329
0.009
0
6mer
107-129
0.003
0
RP11-284A20.2
hsa-miR-520h
0.701
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510242
Biotype: lincRNA
Gene id: ENSG00000249261
Gene Name: RP11-284A20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-397
0.011
4
7mer
210-229
0.010
1
6mer
617-636
0.004
3
RP11-819C21.1
hsa-miR-520h
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
32-58
0.009
2
8mer
3740-3757
0.007
0
7mer
1732-1752
0.004
0
6mer
1312-1334
0.003
1
6mer
1210-1231
0.001
0
RP11-634B7.4
hsa-miR-520h
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449298
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
682-704
0.007
1
6mer
389-408
0.006
1
6mer
827-849
0.006
1
6mer
322-345
0.006
0
LINC00971
hsa-miR-520h
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484892
Biotype: lincRNA
Gene id: ENSG00000242641
Gene Name: LINC00971
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-335
0.012
0
6mer
6513-6535
0.003
1
6mer
3301-3318
0.002
1
6mer
1908-1921
0.002
1
6mer
1742-1759
0.002
1
6mer
4815-4836
0.002
1
6mer
6403-6429
0.002
1
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