LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
XLOC_011480
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024123
Biotype: transcript isomorph
Gene id: XLOC_011480
Gene Name: XLOC_011480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
402-419
0.018
1
7mer
1047-1064
0.007
1
AC007405.4
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624287
Biotype: lincRNA
Gene id: ENSG00000234350
Gene Name: AC007405.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-258
0.015
1
7mer
217-238
0.010
1
RP5-1069C8.3
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000602702
Biotype: lincRNA
Gene id: ENSG00000269931
Gene Name: RP5-1069C8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-512
0.017
1
6mer
197-214
0.006
0
6mer
593-608
0.003
0
RP11-4F22.2
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584715
Biotype: antisense
Gene id: ENSG00000264630
Gene Name: RP11-4F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-673
0.014
0
6mer
1388-1410
0.006
3
6mer
857-879
0.005
4
LINC00698
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465262
Biotype: lincRNA
Gene id: ENSG00000244342
Gene Name: LINC00698
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-161
0.008
2
6mer
302-320
0.007
1
6mer
76-91
0.005
1
6mer
201-217
0.004
1
RP11-389C8.2
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564956
Biotype: sense_overlapping
Gene id: ENSG00000261269
Gene Name: RP11-389C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-552
0.019
4
6mer
245-263
0.006
3
RP11-254I22.1
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507997
Biotype: lincRNA
Gene id: ENSG00000250551
Gene Name: RP11-254I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-583
0.025
0
LINC00326
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457339
Biotype: lincRNA
Gene id: ENSG00000231023
Gene Name: LINC00326
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2282-2296
0.019
0
8mer
929-942
0.006
1
LOC101927190
hsa-miR-520h
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104675.1
Biotype: antisense
Gene id: NR_104675.1 (gene)
Gene Name: LOC101927190
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
422-446
0.009
0
6mer
567-587
0.004
2
6mer
955-959
0.004
3
6mer
616-641
0.004
1
6mer
1871-1893
0.002
1
6mer
2227-2243
0.002
0
RP11-705O24.1
hsa-miR-520h
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523728
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-301
0.025
0
XLOC_012887
hsa-miR-520h
0.706
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026214
Biotype: transcript isomorph
Gene id: XLOC_012887
Gene Name: XLOC_012887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-677
0.020
1
6mer
365-389
0.005
1
RP4-717I23.3
hsa-miR-520h
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424517
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-56
0.025
8
OVOL1-AS1
hsa-miR-520h
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532454
Biotype: antisense
Gene id: ENSG00000255120
Gene Name: OVOL1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
96-109
0.013
6
6mer
103-114
0.012
6
CTD-2331D11.4
hsa-miR-520h
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511602
Biotype: lincRNA
Gene id: ENSG00000249842
Gene Name: CTD-2331D11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-380
0.012
1
6mer
519-544
0.007
1
6mer
501-523
0.007
1
XLOC_004697
hsa-miR-520h
0.705
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010872
Biotype: transcript isomorph
Gene id: XLOC_004697
Gene Name: XLOC_004697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-116
0.013
0
6mer
153-158
0.008
1
6mer
407-427
0.004
0
TUG1
hsa-miR-520h
0.705
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540687
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
320-335
0.009
6
6mer
1886-1899
0.009
8
6mer
2403-2426
0.008
3
LINC00664
hsa-miR-520h
0.705
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2279-2297
0.016
1
8mer
2932-2949
0.009
0
AC104667.3
hsa-miR-520h
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452801
Biotype: antisense
Gene id: ENSG00000234949
Gene Name: AC104667.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-231
0.018
1
7mer
1013-1034
0.007
1
LINC00240
hsa-miR-520h
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424968
Biotype: lincRNA
Gene id: ENSG00000224843
Gene Name: LINC00240
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-184
0.025
1
RP11-704C2.1
hsa-miR-520h
0.704
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564156
Biotype: lincRNA
Gene id: ENSG00000261194
Gene Name: RP11-704C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-681
0.020
1
6mer
369-393
0.005
1
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