LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
XLOC_000429
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001176
Biotype: transcript isomorph
Gene id: XLOC_000429
Gene Name: XLOC_000429
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-63
0.020
1
6mer
215-230
0.006
0
RP5-858B6.3
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439341
Biotype: antisense
Gene id: ENSG00000223393
Gene Name: RP5-858B6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-100
0.014
0
7mer
624-629
0.008
1
6mer
547-569
0.003
1
GS1-600G8.5
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412485
Biotype: lincRNA
Gene id: ENSG00000235385
Gene Name: GS1-600G8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
459-474
0.009
3
6mer
849-865
0.007
6
6mer
1467-1482
0.005
1
6mer
299-316
0.004
1
CTD-2035E11.3
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509036
Biotype: antisense
Gene id: ENSG00000251131
Gene Name: CTD-2035E11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-185
0.025
1
LINC01258
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512517
Biotype: lincRNA
Gene id: ENSG00000249534
Gene Name: LINC01258
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1386
0.017
1
6mer
1764-1785
0.005
1
6mer
1040-1059
0.003
1
XLOC_012004
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
863-868
0.013
8
7mer
1019-1035
0.007
9
6mer
738-761
0.004
8
6mer
1339-1359
0.002
3
HCG25
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442228
Biotype: antisense
Gene id: ENSG00000232940
Gene Name: HCG25
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-126
0.025
2
RP11-261C10.4
hsa-miR-520h
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422938
Biotype: antisense
Gene id: ENSG00000232085
Gene Name: RP11-261C10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-246
0.025
1
RP11-171I2.1
hsa-miR-520h
0.710
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3225-3244
0.012
1
6mer
127-145
0.005
2
6mer
587-607
0.005
7
6mer
2459-2481
0.004
7
RP11-263K4.3
hsa-miR-520h
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-176
0.013
5
6mer
3088-3104
0.008
4
6mer
2363-2383
0.004
2
CTB-111F10.1
hsa-miR-520h
0.710
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415249
Biotype: lincRNA
Gene id: ENSG00000223665
Gene Name: CTB-111F10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-137
0.025
1
XLOC_008274
hsa-miR-520h
0.710
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
202-227
0.005
0
8mer
1804-1811
0.004
0
6mer
2366-2384
0.003
1
8mer
3136-3158
0.003
Not Conserved
6mer
2586-2604
0.003
1
6mer
4901-4920
0.003
0
6mer
2740-2758
0.002
1
6mer
2853-2872
0.002
1
6mer
2627-2644
0.000
Not Conserved
CTD-2218G20.2
hsa-miR-520h
0.709
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505518
Biotype: lincRNA
Gene id: ENSG00000248279
Gene Name: CTD-2218G20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1568-1593
0.016
1
7mer
1258-1271
0.006
1
6mer
1687-1709
0.003
0
NUTM2B-AS1
hsa-miR-520h
0.709
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000484794
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
387-403
0.020
2
6mer
161-188
0.005
0
RP11-7O11.3
hsa-miR-520h
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445226
Biotype: antisense
Gene id: ENSG00000237950
Gene Name: RP11-7O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-20
0.025
1
XLOC_011429
hsa-miR-520h
0.709
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023629
Biotype: transcript isomorph
Gene id: XLOC_011429
Gene Name: XLOC_011429
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-461
0.018
0
6mer
521-541
0.008
4
RP11-73K9.2
hsa-miR-520h
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562919
Biotype: antisense
Gene id: ENSG00000260526
Gene Name: RP11-73K9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1868-1891
0.020
7
6mer
1727-1752
0.005
1
RP11-374A4.1
hsa-miR-520h
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503488
Biotype: lincRNA
Gene id: ENSG00000249359
Gene Name: RP11-374A4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-340
0.015
0
7mer
336-355
0.010
1
PRICKLE2-AS1
hsa-miR-520h
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4385-4410
0.010
2
8mer
1669-1675
0.009
7
7mer
3605-3625
0.007
1
RP11-338C15.5
hsa-miR-520h
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427949
Biotype: antisense
Gene id: ENSG00000235862
Gene Name: RP11-338C15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
146-162
0.013
8
6mer
118-135
0.012
8
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