LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-520h


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
AC012309.5
hsa-miR-520h
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587477
Biotype: lincRNA
Gene id: ENSG00000226686
Gene Name: AC012309.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-202
0.011
1
6mer
541-567
0.009
2
6mer
87-97
0.005
0
CTD-2013N24.2
hsa-miR-520h
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482368
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-256
0.013
1
6mer
519-534
0.012
10
XLOC_000744
hsa-miR-520h
0.715
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001429
Biotype: transcript isomorph
Gene id: XLOC_000744
Gene Name: XLOC_000744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
628-655
0.020
1
8mer
311-334
0.006
0
XLOC_007401
hsa-miR-520h
0.715
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016011
Biotype: transcript isomorph
Gene id: XLOC_007401
Gene Name: XLOC_007401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1108-1129
0.009
1
7mer
167-187
0.007
2
7mer
990-995
0.005
1
6mer
412-437
0.003
Not Conserved
6mer
1302-1323
0.002
Not Conserved
OIP5-AS1
hsa-miR-520h
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2199-2204
0.005
Not Conserved
6mer
221-244
0.005
1
7mer
929-948
0.004
1
6mer
8023-8042
0.003
1
6mer
5088-5097
0.003
3
6mer
3189-3209
0.002
6
8mer
4529-4548
0.002
0
6mer
5496-5515
0.002
4
RP3-405J10.3
hsa-miR-520h
0.714
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2500-2521
0.007
1
8mer
4391-4410
0.006
0
6mer
768-792
0.004
3
7mer
2700-2724
0.004
3
6mer
914-937
0.003
1
6mer
3447-3467
0.002
1
LOC101928882
hsa-miR-520h
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_109986.1
Biotype: sense
Gene id: NR_109986.1 (gene)
Gene Name: LOC101928882
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-644
0.018
6
6mer
241-267
0.008
4
RP11-464F9.22
hsa-miR-520h
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609434
Biotype: lincRNA
Gene id: ENSG00000272791
Gene Name: RP11-464F9.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
907-927
0.011
4
7mer
686-702
0.009
0
7mer
374-399
0.006
2
XLOC_001315
hsa-miR-520h
0.714
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002796
Biotype: transcript isomorph
Gene id: XLOC_001315
Gene Name: XLOC_001315
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-320
0.026
3
XLOC_002744
hsa-miR-520h
0.714
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005423
Biotype: transcript isomorph
Gene id: XLOC_002744
Gene Name: XLOC_002744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-49
0.026
0
RP11-673E1.1
hsa-miR-520h
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509873
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-393
0.009
0
6mer
1211-1229
0.008
1
6mer
1187-1202
0.004
0
6mer
692-706
0.004
1
XLOC_004268
hsa-miR-520h
0.714
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009854
Biotype: transcript isomorph
Gene id: XLOC_004268
Gene Name: XLOC_004268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-289
0.026
1
PCAT19
hsa-miR-520h
0.713
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598215
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
48-68
0.026
1
CTD-3051D23.4
hsa-miR-520h
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553344
Biotype: lincRNA
Gene id: ENSG00000258593
Gene Name: CTD-3051D23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-315
0.016
0
8mer
637-662
0.009
0
RP11-524C21.2
hsa-miR-520h
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000567753
Biotype: lincRNA
Gene id: ENSG00000261568
Gene Name: RP11-524C21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1414-1434
0.012
2
8mer
568-594
0.007
0
6mer
589-605
0.004
1
6mer
296-318
0.003
1
LINC00973
hsa-miR-520h
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473756
Biotype: lincRNA
Gene id: ENSG00000240476
Gene Name: LINC00973
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
413-435
0.013
9
6mer
522-532
0.007
7
6mer
684-689
0.006
1
XLOC_003780
hsa-miR-520h
0.712
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008324
Biotype: transcript isomorph
Gene id: XLOC_003780
Gene Name: XLOC_003780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-97
0.020
2
6mer
271-294
0.005
0
CTD-2541M15.4
hsa-miR-520h
0.712
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607697
Biotype: lincRNA
Gene id: ENSG00000271927
Gene Name: CTD-2541M15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1289-1297
0.015
2
6mer
403-421
0.008
1
6mer
894-906
0.003
0
OVOL1-AS1
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534178
Biotype: antisense
Gene id: ENSG00000255120
Gene Name: OVOL1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
96-109
0.014
6
6mer
103-114
0.012
6
LOC642846
hsa-miR-520h
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024374.1
Biotype: lincRNA
Gene id: NR_024374.1 (gene)
Gene Name: LOC642846
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
419-439
0.010
7
8mer
2033-2057
0.006
6
6mer
1026-1044
0.004
7
6mer
3278-3288
0.003
0
6mer
2567-2586
0.002
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept