LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
RP11-756H20.1
hsa-miR-520h
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564199
Biotype: lincRNA
Gene id: ENSG00000260192
Gene Name: RP11-756H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
861-883
0.011
0
6mer
427-442
0.010
7
6mer
1237-1264
0.005
0
VSTM2A-OT1
hsa-miR-520h
0.719
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456049
Biotype: sense_overlapping
Gene id: ENSG00000224223
Gene Name: VSTM2A-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2877-2895
0.021
6
6mer
2739-2754
0.003
0
6mer
848-866
0.002
1
RP11-1376P16.1
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582774
Biotype: antisense
Gene id: ENSG00000266654
Gene Name: RP11-1376P16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-29
0.015
1
8mer
298-317
0.011
0
XLOC_012488
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025662
Biotype: transcript isomorph
Gene id: XLOC_012488
Gene Name: XLOC_012488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-320
0.026
1
RP11-76E12.1
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556163
Biotype: lincRNA
Gene id: ENSG00000197176
Gene Name: RP11-76E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-28
0.026
7
RP11-153M7.5
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505051
Biotype: antisense
Gene id: ENSG00000249309
Gene Name: RP11-153M7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-475
0.026
2
RBPMS-AS1
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519753
Biotype: antisense
Gene id: ENSG00000254109
Gene Name: RBPMS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-721
0.014
1
6mer
8-20
0.007
2
6mer
395-414
0.005
2
RP11-374M1.2
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-174
0.026
0
XLOC_006128
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-172
0.020
0
6mer
686-709
0.006
0
RP4-758J18.13
hsa-miR-520h
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607307
Biotype: lincRNA
Gene id: ENSG00000272455
Gene Name: RP4-758J18.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-102
0.011
0
6mer
1395-1415
0.006
0
6mer
1308-1332
0.005
0
6mer
897-922
0.005
0
XLOC_013174
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
866-886
0.013
0
6mer
533-553
0.013
0
AL136419.6
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565988
Biotype: retained_intron
Gene id: ENSG00000260669
Gene Name: AL136419.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1704-1709
0.015
7
7mer
1745-1760
0.006
3
6mer
198-217
0.005
2
XLOC_009515
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019718
Biotype: transcript isomorph
Gene id: XLOC_009515
Gene Name: XLOC_009515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-431
0.017
0
6mer
958-980
0.009
6
XLOC_012720
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026369
Biotype: transcript isomorph
Gene id: XLOC_012720
Gene Name: XLOC_012720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2700-2726
0.017
6
6mer
4766-4785
0.003
1
6mer
2456-2468
0.002
5
6mer
3021-3035
0.002
3
7mer
1247-1271
0.001
0
LINC00824
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520206
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1822-1844
0.017
1
7mer
1216-1232
0.006
Not Conserved
6mer
767-787
0.003
1
XLOC_007218
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014536
Biotype: transcript isomorph
Gene id: XLOC_007218
Gene Name: XLOC_007218
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1821-1843
0.017
1
7mer
1215-1231
0.006
Not Conserved
6mer
766-786
0.003
1
CTD-3126B10.4
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565111
Biotype: lincRNA
Gene id: ENSG00000260176
Gene Name: CTD-3126B10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-263
0.011
1
6mer
62-75
0.011
3
6mer
444-466
0.003
0
MAGI2-AS3
hsa-miR-520h
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429408
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-589
0.026
2
RP11-7O11.3
hsa-miR-520h
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446167
Biotype: antisense
Gene id: ENSG00000237950
Gene Name: RP11-7O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-22
0.026
1
RP5-855D21.3
hsa-miR-520h
0.716
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000609090
Biotype: sense_intronic
Gene id: ENSG00000272812
Gene Name: RP5-855D21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-527
0.018
2
6mer
453-476
0.008
1
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