LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
LINC00948
hsa-miR-520h
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000599605
Biotype: lincRNA
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-105
0.026
4
RP4-594I10.3
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000577528
Biotype: lincRNA
Gene id: ENSG00000264443
Gene Name: RP4-594I10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-216
0.026
1
AC020743.2
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454877
Biotype: antisense
Gene id: ENSG00000228005
Gene Name: AC020743.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
616-632
0.011
7
6mer
4-31
0.008
3
8mer
449-470
0.008
1
XLOC_010972
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022677
Biotype: transcript isomorph
Gene id: XLOC_010972
Gene Name: XLOC_010972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
519-532
0.016
1
6mer
599-622
0.011
1
RP11-388C12.8
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572594
Biotype: sense_intronic
Gene id: ENSG00000262410
Gene Name: RP11-388C12.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
622-634
0.026
2
LINC00948
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000602051
Biotype: lincRNA
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-105
0.026
4
RP11-700H13.1
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569328
Biotype: lincRNA
Gene id: ENSG00000261638
Gene Name: RP11-700H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
406-425
0.018
Not Conserved
6mer
41-66
0.006
1
6mer
268-288
0.003
Not Conserved
RP11-381O7.3
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000315293
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1465-1471
0.009
1
8mer
793-814
0.007
0
6mer
2288-2309
0.006
1
6mer
971-981
0.003
0
6mer
772-798
0.001
0
XLOC_011185
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023184
Biotype: transcript isomorph
Gene id: XLOC_011185
Gene Name: XLOC_011185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4078-4093
0.008
3
7mer
2302-2315
0.007
4
7mer
3607-3628
0.007
1
6mer
4147-4173
0.004
1
RP1-27K12.2
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506206
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
471-493
0.012
5
6mer
7-31
0.009
0
6mer
584-598
0.005
1
RP11-63E9.1
hsa-miR-520h
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000565399
Biotype: lincRNA
Gene id: ENSG00000259828
Gene Name: RP11-63E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
864-884
0.015
3
6mer
3819-3834
0.004
0
6mer
2744-2768
0.002
1
7mer
1710-1728
0.002
0
6mer
2328-2349
0.002
1
IPW
hsa-miR-520h
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_023915.1
Biotype: lincRNA
Gene id: NR_023915.1 (gene)
Gene Name: IPW
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4078-4093
0.008
3
7mer
2302-2315
0.007
4
7mer
3607-3628
0.007
1
6mer
4147-4173
0.004
1
XLOC_010870
hsa-miR-520h
0.721
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023015
Biotype: transcript isomorph
Gene id: XLOC_010870
Gene Name: XLOC_010870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
966-985
0.011
1
7mer
305-328
0.009
1
8mer
486-507
0.006
0
RP11-81H3.2
hsa-miR-520h
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551210
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
38-49
0.026
1
RP11-489E7.1
hsa-miR-520h
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521908
Biotype: lincRNA
Gene id: ENSG00000253604
Gene Name: RP11-489E7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-54
0.026
1
RP11-775H9.1
hsa-miR-520h
0.720
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511749
Biotype: lincRNA
Gene id: ENSG00000250665
Gene Name: RP11-775H9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
422-444
0.016
0
7mer
379-404
0.005
0
6mer
228-251
0.005
1
LINC01104
hsa-miR-520h
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452354
Biotype: lincRNA
Gene id: ENSG00000232084
Gene Name: LINC01104
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2461-2485
0.012
1
8mer
2864-2883
0.007
1
6mer
172-196
0.004
2
6mer
2653-2673
0.004
0
RP3-395M20.8
hsa-miR-520h
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443892
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-120
0.026
1
XLOC_004767
hsa-miR-520h
0.719
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010294
Biotype: transcript isomorph
Gene id: XLOC_004767
Gene Name: XLOC_004767
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-132
0.026
0
NR2F1-AS1
hsa-miR-520h
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513055
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-467
0.026
8
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