LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
AC144835.1
hsa-miR-520h
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554798
Biotype: lincRNA
Gene id: ENSG00000258483
Gene Name: AC144835.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-307
0.023
3
6mer
332-349
0.003
1
FAR2P2
hsa-miR-520h
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046259.1
Biotype: lincRNA
Gene id: NR_046259.1 (gene)
Gene Name: FAR2P2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2540-2561
0.012
0
8mer
2680-2697
0.010
0
6mer
247-267
0.003
Not Conserved
6mer
390-409
0.002
Not Conserved
XLOC_012572
hsa-miR-520h
0.727
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025762
Biotype: transcript isomorph
Gene id: XLOC_012572
Gene Name: XLOC_012572
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4701-4714
0.007
Not Conserved
7mer
1184-1208
0.006
0
6mer
4163-4179
0.004
2
6mer
844-853
0.003
1
6mer
3573-3593
0.002
1
7mer
3055-3068
0.002
1
6mer
1090-1105
0.001
1
XLOC_012558
hsa-miR-520h
0.727
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025741
Biotype: transcript isomorph
Gene id: XLOC_012558
Gene Name: XLOC_012558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-433
0.010
Not Conserved
7mer
452-475
0.006
Not Conserved
7mer
372-394
0.006
Not Conserved
7mer
339-358
0.005
Not Conserved
RP11-304F15.3
hsa-miR-520h
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000376609
Biotype: antisense
Gene id: ENSG00000204584
Gene Name: RP11-304F15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-91
0.023
6
6mer
494-513
0.003
1
RP1-27K12.2
hsa-miR-520h
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505995
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2609-2631
0.012
5
6mer
819-840
0.004
1
6mer
2145-2169
0.004
0
6mer
2848-2862
0.004
1
6mer
1156-1179
0.002
1
RP11-1L9.1
hsa-miR-520h
0.726
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446964
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
310-326
0.027
1
RP11-319G9.3
hsa-miR-520h
0.725
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568885
Biotype: sense_intronic
Gene id: ENSG00000260816
Gene Name: RP11-319G9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-662
0.007
1
9mer
2466-2474
0.006
0
7mer
3187-3202
0.005
3
7mer
1996-2022
0.004
1
6mer
3051-3073
0.002
3
6mer
2719-2738
0.002
0
6mer
2067-2072
0.001
1
RP11-230L22.4
hsa-miR-520h
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000458025
Biotype: antisense
Gene id: ENSG00000237336
Gene Name: RP11-230L22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
367-385
0.021
9
6mer
9-29
0.005
1
LINC01430
hsa-miR-520h
0.725
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000415299
Biotype: antisense
Gene id: ENSG00000237907
Gene Name: LINC01430
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-173
0.027
1
RP5-834N19.1
hsa-miR-520h
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457683
Biotype: lincRNA
Gene id: ENSG00000232650
Gene Name: RP5-834N19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-165
0.014
4
7mer
321-326
0.012
1
XLOC_002585
hsa-miR-520h
0.725
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5727-5746
0.010
1
7mer
5990-6004
0.005
1
8mer
721-738
0.005
1
6mer
4409-4435
0.002
1
6mer
4836-4858
0.002
1
6mer
2068-2091
0.002
2
AC017076.5
hsa-miR-520h
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414795
Biotype: antisense
Gene id: ENSG00000225964
Gene Name: AC017076.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-181
0.021
0
6mer
420-446
0.006
0
XLOC_010419
hsa-miR-520h
0.724
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021820
Biotype: transcript isomorph
Gene id: XLOC_010419
Gene Name: XLOC_010419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2451-2467
0.015
0
7mer
820-836
0.008
1
6mer
1794-1816
0.003
1
RP11-445O3.3
hsa-miR-520h
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1476-1497
0.016
0
6mer
1303-1324
0.007
0
7mer
672-689
0.003
Not Conserved
AL133243.2
hsa-miR-520h
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617415
Biotype: sense_intronic
Gene id: ENSG00000276517
Gene Name: AL133243.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
718-743
0.014
0
6mer
2889-2912
0.008
3
6mer
1129-1147
0.002
1
6mer
1255-1269
0.002
1
XLOC_000042
hsa-miR-520h
0.724
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000832
Biotype: transcript isomorph
Gene id: XLOC_000042
Gene Name: XLOC_000042
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3648-3665
0.010
1
8mer
3024-3042
0.009
1
9mer
290-308
0.004
0
6mer
3009-3029
0.004
2
AL109763.1
hsa-miR-520h
0.724
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455391
Biotype: sense_overlapping
Gene id: ENSG00000228708
Gene Name: AL109763.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-365
0.019
0
7mer
361-377
0.007
0
XLOC_006242
hsa-miR-520h
0.723
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
566-587
0.011
1
6mer
2315-2331
0.008
0
7mer
1623-1644
0.008
0
LINC01355
hsa-miR-520h
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566551
Biotype: lincRNA
Gene id: ENSG00000261326
Gene Name: LINC01355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5394-5409
0.005
0
6mer
154-177
0.005
1
6mer
4462-4481
0.004
3
6mer
4819-4830
0.004
2
6mer
248-272
0.003
0
6mer
2128-2153
0.002
1
6mer
3009-3035
0.001
1
6mer
3778-3800
0.001
0
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