LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
LINC00461
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505030
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
55-64
0.010
9
7mer
2318-2337
0.005
5
6mer
564-589
0.004
4
6mer
774-796
0.004
6
6mer
3278-3298
0.003
Not Conserved
RP11-98G7.1
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441085
Biotype: lincRNA
Gene id: ENSG00000236947
Gene Name: RP11-98G7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-390
0.016
1
6mer
488-503
0.006
3
6mer
8-21
0.005
0
RP11-401P9.4
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563424
Biotype: lincRNA
Gene id: ENSG00000261685
Gene Name: RP11-401P9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-219
0.022
8
6mer
3359-3386
0.005
1
AP001442.2
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456904
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
655-680
0.027
0
RP11-699L21.1
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000397645
Biotype: lincRNA
Gene id: ENSG00000214146
Gene Name: RP11-699L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-145
0.014
1
7mer
172-177
0.009
0
6mer
1020-1034
0.004
2
CTC-444N24.8
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600047
Biotype: lincRNA
Gene id: ENSG00000268713
Gene Name: CTC-444N24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1365-1383
0.020
1
6mer
1246-1252
0.007
3
AC002454.1
hsa-miR-520h
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435695
Biotype: antisense
Gene id: ENSG00000237819
Gene Name: AC002454.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-357
0.027
8
RP11-768B22.2
hsa-miR-520h
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515789
Biotype: antisense
Gene id: ENSG00000248571
Gene Name: RP11-768B22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-147
0.015
0
6mer
2307-2325
0.009
2
6mer
1306-1323
0.004
2
XLOC_012049
hsa-miR-520h
0.732
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024774
Biotype: transcript isomorph
Gene id: XLOC_012049
Gene Name: XLOC_012049
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1487-1499
0.018
Not Conserved
8mer
624-636
0.009
2
AC069277.2
hsa-miR-520h
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414438
Biotype: lincRNA
Gene id: ENSG00000189229
Gene Name: AC069277.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-553
0.020
1
6mer
719-738
0.007
0
RP5-1086K13.1
hsa-miR-520h
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456414
Biotype: lincRNA
Gene id: ENSG00000224950
Gene Name: RP5-1086K13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-229
0.015
0
7mer
1699-1716
0.008
1
6mer
1550-1569
0.004
4
RP11-408N14.1
hsa-miR-520h
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000435092
Biotype: lincRNA
Gene id: ENSG00000236921
Gene Name: RP11-408N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-112
0.027
4
LINC01018
hsa-miR-520h
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505626
Biotype: lincRNA
Gene id: ENSG00000250056
Gene Name: LINC01018
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2649-2666
0.013
1
7mer
2159-2181
0.008
0
7mer
2372-2396
0.003
Not Conserved
6mer
1767-1779
0.003
1
XLOC_010752
hsa-miR-520h
0.731
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022420
Biotype: transcript isomorph
Gene id: XLOC_010752
Gene Name: XLOC_010752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1696-1712
0.013
0
6mer
1878-1902
0.008
1
7mer
1644-1666
0.006
0
XLOC_009049
hsa-miR-520h
0.731
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019217
Biotype: transcript isomorph
Gene id: XLOC_009049
Gene Name: XLOC_009049
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-399
0.022
0
6mer
113-135
0.005
4
XLOC_007486
hsa-miR-520h
0.731
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016660
Biotype: transcript isomorph
Gene id: XLOC_007486
Gene Name: XLOC_007486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2138-2151
0.014
3
8mer
1458-1485
0.008
1
6mer
92-109
0.003
1
6mer
1513-1528
0.002
5
XLOC_010052
hsa-miR-520h
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020760
Biotype: transcript isomorph
Gene id: XLOC_010052
Gene Name: XLOC_010052
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-170
0.016
2
6mer
106-130
0.004
1
7mer
1188-1202
0.004
2
6mer
1681-1694
0.003
3
CTD-2525I3.6
hsa-miR-520h
0.730
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594379
Biotype: antisense
Gene id: ENSG00000269535
Gene Name: CTD-2525I3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-438
0.009
Not Conserved
8mer
1718-1735
0.008
0
6mer
506-524
0.005
1
6mer
989-1008
0.003
1
6mer
932-955
0.002
1
XLOC_003061
hsa-miR-520h
0.730
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-80
0.006
0
6mer
5508-5531
0.003
5
8mer
4691-4708
0.003
1
6mer
1798-1819
0.003
2
7mer
5282-5309
0.003
2
6mer
3099-3107
0.002
2
6mer
2543-2567
0.002
2
6mer
1014-1036
0.001
0
6mer
2329-2349
0.001
0
6mer
1615-1637
0.001
0
6mer
2888-2915
0.001
0
XLOC_009233
hsa-miR-520h
0.730
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019409
Biotype: transcript isomorph
Gene id: XLOC_009233
Gene Name: XLOC_009233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2412-2428
0.007
0
8mer
304-321
0.006
1
7mer
596-606
0.006
0
8mer
1761-1778
0.005
0
6mer
655-665
0.003
2
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