LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
XLOC_012630
hsa-miR-520h
0.737
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1365-1382
0.009
0
6mer
85-110
0.007
0
6mer
579-596
0.007
0
6mer
1007-1024
0.004
0
XLOC_005193
hsa-miR-520h
0.737
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011715
Biotype: transcript isomorph
Gene id: XLOC_005193
Gene Name: XLOC_005193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-362
0.028
1
XLOC_007930
hsa-miR-520h
0.737
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017140
Biotype: transcript isomorph
Gene id: XLOC_007930
Gene Name: XLOC_007930
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1079-1104
0.019
2
6mer
1206-1230
0.005
1
6mer
460-475
0.004
1
LOC648987
hsa-miR-520h
0.737
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
880-903
0.016
1
6mer
197-221
0.008
1
6mer
1452-1469
0.003
1
RP1-27K12.2
hsa-miR-520h
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000503985
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2623-2645
0.010
5
6mer
833-854
0.004
1
6mer
3034-3059
0.004
1
6mer
2159-2183
0.004
0
6mer
2919-2933
0.004
1
6mer
1170-1193
0.002
1
RP11-798L4.1
hsa-miR-520h
0.737
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000381217
Biotype: lincRNA
Gene id: ENSG00000205682
Gene Name: RP11-798L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1779-1797
0.012
0
8mer
421-438
0.008
0
7mer
693-713
0.005
1
7mer
855-882
0.003
0
XLOC_001716
hsa-miR-520h
0.736
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003910
Biotype: transcript isomorph
Gene id: XLOC_001716
Gene Name: XLOC_001716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
577-593
0.016
2
6mer
1071-1094
0.008
7
6mer
833-852
0.003
1
LINC00948
hsa-miR-520h
0.736
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600486
Biotype: retained_intron
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-105
0.027
4
XLOC_012645
hsa-miR-520h
0.735
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026300
Biotype: transcript isomorph
Gene id: XLOC_012645
Gene Name: XLOC_012645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-434
0.019
2
7mer
380-398
0.008
2
RP11-381O7.3
hsa-miR-520h
0.735
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000598595
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1465-1471
0.013
1
8mer
793-814
0.010
0
6mer
971-981
0.003
0
6mer
772-798
0.001
0
XLOC_003482
hsa-miR-520h
0.735
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008017
Biotype: transcript isomorph
Gene id: XLOC_003482
Gene Name: XLOC_003482
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-222
0.016
1
6mer
652-664
0.007
2
6mer
218-233
0.004
1
LINC00905
hsa-miR-520h
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588838
Biotype: lincRNA
Gene id: ENSG00000167459
Gene Name: LINC00905
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1157-1176
0.022
1
7mer
935-951
0.006
1
KIZ-AS1
hsa-miR-520h
0.734
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5143-5161
0.010
2
6mer
304-329
0.004
2
8mer
4597-4614
0.004
0
7mer
4307-4330
0.003
0
6mer
3880-3904
0.002
2
7mer
2273-2287
0.002
0
6mer
1081-1100
0.002
1
RP1-257A7.4
hsa-miR-520h
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606150
Biotype: antisense
Gene id: ENSG00000215022
Gene Name: RP1-257A7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-97
0.018
1
7mer
787-810
0.005
1
6mer
208-226
0.004
1
XLOC_007438
hsa-miR-520h
0.734
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015577
Biotype: transcript isomorph
Gene id: XLOC_007438
Gene Name: XLOC_007438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6239-6249
0.009
1
7mer
5682-5705
0.004
1
6mer
6333-6352
0.004
1
6mer
6261-6284
0.003
0
6mer
5162-5183
0.003
1
6mer
5606-5628
0.002
0
6mer
1683-1703
0.002
1
RP4-671O14.7
hsa-miR-520h
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12908-12925
0.004
1
6mer
2118-2137
0.004
5
7mer
14392-14411
0.003
1
6mer
16597-16617
0.003
3
8mer
9919-9936
0.003
0
8mer
8569-8586
0.002
0
7mer
17470-17487
0.002
0
6mer
2558-2576
0.002
Not Conserved
6mer
1708-1721
0.002
1
6mer
5876-5902
0.001
0
8mer
5721-5738
0.001
Not Conserved
6mer
5832-5846
0.001
0
RP5-1039K5.18
hsa-miR-520h
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609265
Biotype: lincRNA
Gene id: ENSG00000273214
Gene Name: RP5-1039K5.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-652
0.027
0
CTD-2516F10.2
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530201
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-456
0.027
2
CTD-2013N24.2
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595925
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-33
0.017
1
7mer
646-661
0.011
1
RP11-15A1.3
hsa-miR-520h
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587128
Biotype: lincRNA
Gene id: ENSG00000267058
Gene Name: RP11-15A1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-496
0.014
0
7mer
491-510
0.007
1
6mer
581-602
0.004
0
6mer
571-587
0.002
0
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