LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-520h


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_001966
hsa-miR-520h
0.747
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004118
Biotype: transcript isomorph
Gene id: XLOC_001966
Gene Name: XLOC_001966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1367-1391
0.009
2
8mer
916-943
0.007
0
6mer
116-129
0.006
3
6mer
527-545
0.004
3
6mer
1005-1022
0.002
0
CTA-243E7.4
hsa-miR-520h
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623888
Biotype: antisense
Gene id: ENSG00000279085
Gene Name: CTA-243E7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-177
0.008
1
8mer
4846-4865
0.006
1
8mer
757-774
0.006
1
8mer
1725-1742
0.003
1
7mer
2849-2868
0.003
0
6mer
2275-2295
0.002
0
8mer
2213-2230
0.001
1
PRICKLE2-AS1
hsa-miR-520h
0.746
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476308
Biotype: antisense
Gene id: ENSG00000241572
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-537
0.028
2
FAR2P2
hsa-miR-520h
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046260.1
Biotype: lincRNA
Gene id: NR_046260.1 (gene)
Gene Name: FAR2P2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2415-2436
0.013
0
8mer
2555-2572
0.010
0
6mer
247-267
0.003
Not Conserved
6mer
390-409
0.002
Not Conserved
RP11-359K18.4
hsa-miR-520h
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609669
Biotype: sense_intronic
Gene id: ENSG00000272574
Gene Name: RP11-359K18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
341-346
0.018
0
8mer
387-404
0.011
1
LINC00461
hsa-miR-520h
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
55-64
0.010
9
7mer
2318-2337
0.006
5
6mer
564-589
0.004
4
6mer
774-796
0.004
6
6mer
3278-3298
0.004
Not Conserved
CTD-2378E12.1
hsa-miR-520h
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619889
Biotype: lincRNA
Gene id: ENSG00000273674
Gene Name: CTD-2378E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.028
0
C14orf132
hsa-miR-520h
0.745
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555004
Biotype: lincRNA
Gene id: ENSG00000227051
Gene Name: C14orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7500-7518
0.016
0
7mer
6976-6998
0.005
3
6mer
926-946
0.003
1
8mer
3827-3852
0.002
0
6mer
4114-4134
0.002
1
RP1-101G11.3
hsa-miR-520h
0.745
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
38-62
0.008
6
8mer
9526-9541
0.004
1
8mer
7091-7108
0.004
0
7mer
4736-4756
0.003
2
6mer
9930-9943
0.003
1
7mer
1505-1520
0.002
1
6mer
6236-6263
0.002
2
6mer
5488-5508
0.001
1
6mer
6259-6270
0.001
1
XLOC_012257
hsa-miR-520h
0.744
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025439
Biotype: transcript isomorph
Gene id: XLOC_012257
Gene Name: XLOC_012257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-173
0.028
0
XLOC_007512
hsa-miR-520h
0.744
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016127
Biotype: transcript isomorph
Gene id: XLOC_007512
Gene Name: XLOC_007512
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3562-3574
0.013
5
6mer
465-471
0.005
2
6mer
3675-3701
0.004
1
7mer
1720-1743
0.004
1
6mer
1983-2003
0.002
1
XLOC_003471
hsa-miR-520h
0.744
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007487
Biotype: transcript isomorph
Gene id: XLOC_003471
Gene Name: XLOC_003471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1645-1662
0.010
0
6mer
514-541
0.007
3
8mer
995-1014
0.006
1
6mer
848-865
0.005
1
RP4-565E6.1
hsa-miR-520h
0.744
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000611452
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-205
0.020
5
6mer
245-257
0.008
4
CBR3-AS1
hsa-miR-520h
0.743
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432988
Biotype: retained_intron
Gene id: ENSG00000236830
Gene Name: CBR3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
776-781
0.007
6
7mer
4287-4312
0.005
0
7mer
3641-3665
0.004
0
6mer
536-558
0.004
2
8mer
2740-2761
0.004
0
8mer
1465-1482
0.002
0
6mer
1136-1155
0.001
1
AC002454.1
hsa-miR-520h
0.743
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452050
Biotype: antisense
Gene id: ENSG00000237819
Gene Name: AC002454.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-396
0.028
8
GCSAML-AS1
hsa-miR-520h
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420469
Biotype: antisense
Gene id: ENSG00000227135
Gene Name: GCSAML-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1336-1363
0.010
2
6mer
57-74
0.010
1
6mer
131-146
0.008
1
RP11-116D17.4
hsa-miR-520h
0.743
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617627
Biotype: lincRNA
Gene id: ENSG00000276308
Gene Name: RP11-116D17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1408-1428
0.013
3
6mer
11-30
0.006
0
7mer
883-893
0.005
1
6mer
1698-1717
0.005
1
XLOC_002759
hsa-miR-520h
0.743
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
209-213
0.008
3
8mer
6502-6519
0.008
1
7mer
5748-5774
0.004
1
8mer
3737-3764
0.003
0
6mer
4969-4988
0.003
2
6mer
5810-5831
0.002
1
6mer
5040-5063
0.001
1
AC011747.7
hsa-miR-520h
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110153.1
Biotype: antisense
Gene id: NR_110153.1 (gene)
Gene Name: AC011747.7
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-94
0.015
1
6mer
297-321
0.007
4
7mer
379-394
0.006
3
CASC15
hsa-miR-520h
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605917
Biotype: lincRNA
Gene id: ENSG00000272168
Gene Name: CASC15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-208
0.013
5
6mer
508-517
0.008
7
7mer
2374-2391
0.004
1
6mer
2169-2185
0.003
8
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept