LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
XLOC_013714
hsa-miR-520h
0.751
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028359
Biotype: transcript isomorph
Gene id: XLOC_013714
Gene Name: XLOC_013714
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-118
0.019
1
7mer
113-133
0.010
0
RP11-166D19.1
hsa-miR-520h
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524376
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-75
0.013
5
7mer
42-68
0.009
1
6mer
1102-1109
0.003
1
6mer
950-970
0.002
1
6mer
805-829
0.001
1
XLOC_003971
hsa-miR-520h
0.751
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007371
Biotype: transcript isomorph
Gene id: XLOC_003971
Gene Name: XLOC_003971
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4037-4054
0.010
0
7mer
841-846
0.007
1
6mer
192-215
0.005
1
7mer
2833-2851
0.004
1
6mer
408-434
0.002
1
FLNB-AS1
hsa-miR-520h
0.751
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488720
Biotype: antisense
Gene id: ENSG00000244161
Gene Name: FLNB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
700-718
0.014
8
7mer
127-152
0.012
1
6mer
3006-3023
0.003
3
XLOC_007630
hsa-miR-520h
0.750
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015785
Biotype: transcript isomorph
Gene id: XLOC_007630
Gene Name: XLOC_007630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-73
0.023
3
6mer
134-152
0.006
1
RP11-707A18.1
hsa-miR-520h
0.750
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509932
Biotype: lincRNA
Gene id: ENSG00000250125
Gene Name: RP11-707A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4038-4055
0.010
0
7mer
842-847
0.007
1
6mer
193-216
0.005
1
7mer
2834-2852
0.004
1
6mer
409-435
0.002
1
RP11-280K24.4
hsa-miR-520h
0.749
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553312
Biotype: sense_overlapping
Gene id: ENSG00000258535
Gene Name: RP11-280K24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-67
0.015
0
7mer
5837-5849
0.010
2
6mer
4710-4733
0.004
1
XLOC_002814
hsa-miR-520h
0.749
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006224
Biotype: transcript isomorph
Gene id: XLOC_002814
Gene Name: XLOC_002814
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-114
0.020
1
6mer
80-92
0.009
0
LINC00948
hsa-miR-520h
0.749
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598384
Biotype: retained_intron
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-105
0.029
4
PRICKLE2-AS1
hsa-miR-520h
0.749
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460946
Biotype: antisense
Gene id: ENSG00000241572
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-316
0.029
2
XXbac-BPG157A10.21
hsa-miR-520h
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606432
Biotype: lincRNA
Gene id: ENSG00000272217
Gene Name: XXbac-BPG157A10.21
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-70
0.024
0
6mer
377-402
0.004
0
RP11-232D9.3
hsa-miR-520h
0.748
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446495
Biotype: lincRNA
Gene id: ENSG00000230159
Gene Name: RP11-232D9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-24
0.029
2
SRGAP2-AS1
hsa-miR-520h
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450872
Biotype: antisense
Gene id: ENSG00000233501
Gene Name: SRGAP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-564
0.013
3
6mer
1674-1691
0.008
4
6mer
1782-1799
0.008
5
XLOC_004961
hsa-miR-520h
0.748
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009756
Biotype: transcript isomorph
Gene id: XLOC_004961
Gene Name: XLOC_004961
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-272
0.010
0
6mer
393-413
0.005
2
6mer
781-785
0.004
3
6mer
442-467
0.004
1
6mer
1697-1719
0.002
1
6mer
2053-2069
0.002
0
IPO11-LRRC70
hsa-miR-520h
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_073584.1
Biotype: sense
Gene id: NR_073584.1 (gene)
Gene Name: IPO11-LRRC70
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1556-1582
0.014
7
6mer
1694-1718
0.009
8
6mer
1281-1299
0.005
3
ST7-AS2
hsa-miR-520h
0.747
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456577
Biotype: antisense
Gene id: ENSG00000226367
Gene Name: ST7-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1157-1172
0.021
3
7mer
736-756
0.008
1
CTD-3049M7.1
hsa-miR-520h
0.747
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556928
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-269
0.028
3
XLOC_007387
hsa-miR-520h
0.747
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015553
Biotype: transcript isomorph
Gene id: XLOC_007387
Gene Name: XLOC_007387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-596
0.013
1
8mer
1247-1268
0.011
0
6mer
1080-1090
0.003
0
6mer
1263-1289
0.001
Not Conserved
RP4-717I23.3
hsa-miR-520h
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442860
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-64
0.028
8
RP4-717I23.3
hsa-miR-520h
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455474
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-83
0.028
8
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