LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
AC009411.2
hsa-miR-520h
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458359
Biotype: lincRNA
Gene id: ENSG00000235537
Gene Name: AC009411.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-405
0.029
1
AC011343.1
hsa-miR-520h
0.755
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522627
Biotype: lincRNA
Gene id: ENSG00000253311
Gene Name: AC011343.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4931-4945
0.012
5
6mer
186-209
0.005
2
6mer
5575-5593
0.005
0
7mer
2195-2220
0.004
1
7mer
3338-3349
0.003
0
AC069277.2
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414603
Biotype: lincRNA
Gene id: ENSG00000189229
Gene Name: AC069277.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-166
0.029
1
AC007128.1
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424460
Biotype: antisense
Gene id: ENSG00000229970
Gene Name: AC007128.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1460-1482
0.010
6
7mer
1504-1525
0.010
4
7mer
1300-1308
0.007
1
6mer
762-785
0.002
0
RP4-565E6.1
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000596220
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-446
0.020
5
6mer
486-498
0.009
4
RBPMS-AS1
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523643
Biotype: antisense
Gene id: ENSG00000254109
Gene Name: RBPMS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-721
0.017
1
6mer
8-20
0.008
2
6mer
395-414
0.005
2
RP11-83A24.2
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610159
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-253
0.009
1
8mer
678-695
0.005
1
6mer
4636-4653
0.003
1
6mer
973-990
0.003
1
6mer
822-842
0.003
1
6mer
2200-2222
0.002
3
8mer
2717-2734
0.002
0
6mer
3383-3388
0.002
1
6mer
3343-3363
0.001
0
AC097662.2
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439598
Biotype: antisense
Gene id: ENSG00000236432
Gene Name: AC097662.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2179-2205
0.012
2
6mer
33-49
0.007
1
6mer
70-94
0.006
3
6mer
1484-1503
0.003
1
RP11-46E17.8
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624632
Biotype: lincRNA
Gene id: ENSG00000280391
Gene Name: RP11-46E17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9107-9130
0.012
0
6mer
155-180
0.005
Not Conserved
8mer
6111-6122
0.003
1
7mer
8117-8126
0.003
0
8mer
7260-7277
0.003
1
6mer
2949-2975
0.002
1
6mer
1554-1574
0.002
1
RP11-57H14.4
hsa-miR-520h
0.754
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564352
Biotype: sense_overlapping
Gene id: ENSG00000260917
Gene Name: RP11-57H14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
142-151
0.011
6
6mer
223-250
0.006
4
8mer
827-844
0.004
1
6mer
3293-3316
0.002
1
6mer
384-397
0.002
0
6mer
1606-1627
0.001
3
6mer
1529-1551
0.001
1
ATP6V0E2-AS1
hsa-miR-520h
0.753
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000488315
Biotype: antisense
Gene id: ENSG00000204934
Gene Name: ATP6V0E2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
61-70
0.019
Not Conserved
6mer
1957-1977
0.005
1
6mer
2313-2339
0.004
0
6mer
1844-1870
0.001
0
RP4-565E6.1
hsa-miR-520h
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000599387
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
635-647
0.020
5
6mer
687-699
0.009
4
XLOC_007279
hsa-miR-520h
0.753
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4359-4372
0.011
0
6mer
5167-5189
0.008
2
8mer
1536-1552
0.006
1
6mer
2682-2698
0.002
1
6mer
1716-1730
0.001
0
RP11-54A9.1
hsa-miR-520h
0.753
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553247
Biotype: lincRNA
Gene id: ENSG00000257219
Gene Name: RP11-54A9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
928-938
0.010
2
7mer
379-404
0.009
Not Conserved
6mer
698-704
0.005
1
7mer
728-750
0.005
1
RP11-379P15.1
hsa-miR-520h
0.753
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2560-2574
0.010
7
7mer
2728-2755
0.007
9
6mer
3652-3672
0.004
2
6mer
1006-1030
0.003
0
6mer
3167-3190
0.002
1
6mer
1626-1639
0.002
2
6mer
1160-1180
0.001
1
6mer
1278-1299
0.001
1
CTA-445C9.14
hsa-miR-520h
0.753
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000565764
Biotype: antisense
Gene id: ENSG00000261188
Gene Name: CTA-445C9.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
954-978
0.013
0
6mer
901-924
0.009
2
6mer
98-118
0.006
1
RP1-140K8.5
hsa-miR-520h
0.752
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000566733
Biotype: lincRNA
Gene id: ENSG00000260604
Gene Name: RP1-140K8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6584-6600
0.005
0
8mer
189-206
0.005
Not Conserved
8mer
1352-1373
0.003
Not Conserved
6mer
6889-6912
0.003
0
6mer
3362-3381
0.003
2
6mer
6089-6103
0.003
0
6mer
4584-4608
0.002
4
6mer
3777-3803
0.002
1
6mer
2534-2559
0.002
1
6mer
2007-2030
0.001
0
6mer
3313-3331
0.000
0
XLOC_005194
hsa-miR-520h
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011716
Biotype: transcript isomorph
Gene id: XLOC_005194
Gene Name: XLOC_005194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1623-1647
0.013
2
7mer
1663-1681
0.006
1
7mer
989-1008
0.005
1
6mer
487-500
0.005
1
RP4-565E6.1
hsa-miR-520h
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464343
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-432
0.015
5
6mer
472-484
0.008
4
6mer
40-49
0.006
3
RP11-298I3.4
hsa-miR-520h
0.752
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557615
Biotype: antisense
Gene id: ENSG00000258457
Gene Name: RP11-298I3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-259
0.011
8
6mer
146-164
0.008
9
6mer
593-609
0.006
2
7mer
640-652
0.004
2
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