LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
RP11-549J18.1
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505668
Biotype: sense_intronic
Gene id: ENSG00000251023
Gene Name: RP11-549J18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-323
0.016
1
8mer
238-255
0.006
0
6mer
2044-2064
0.005
5
6mer
2455-2469
0.003
0
XLOC_007450
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015706
Biotype: transcript isomorph
Gene id: XLOC_007450
Gene Name: XLOC_007450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
985-1009
0.016
1
6mer
1038-1059
0.005
0
6mer
1111-1131
0.004
0
6mer
448-474
0.004
3
RSF1-IT1
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528233
Biotype: sense_intronic
Gene id: ENSG00000255409
Gene Name: RSF1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
377-392
0.018
5
8mer
263-280
0.011
1
XLOC_000294
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
965-981
0.010
1
6mer
9178-9204
0.005
1
7mer
5496-5512
0.005
1
6mer
2131-2147
0.002
3
8mer
4883-4900
0.002
0
6mer
6977-6996
0.002
1
6mer
1704-1714
0.001
1
6mer
2735-2756
0.001
1
XLOC_011618
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024308
Biotype: transcript isomorph
Gene id: XLOC_011618
Gene Name: XLOC_011618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1509-1532
0.013
0
7mer
1574-1579
0.009
0
6mer
1027-1045
0.005
2
6mer
748-773
0.003
Not Conserved
RP11-348M17.2
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521984
Biotype: antisense
Gene id: ENSG00000253403
Gene Name: RP11-348M17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-259
0.029
5
RP11-586K12.10
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570084
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-49
0.029
0
AC093590.1
hsa-miR-520h
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439734
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1829-1854
0.017
3
7mer
1125-1137
0.009
10
6mer
1543-1561
0.003
0
RP11-528A4.2
hsa-miR-520h
0.757
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445168
Biotype: lincRNA
Gene id: ENSG00000229155
Gene Name: RP11-528A4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-144
0.029
1
XLOC_010464
hsa-miR-520h
0.757
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021582
Biotype: transcript isomorph
Gene id: XLOC_010464
Gene Name: XLOC_010464
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-240
0.020
1
6mer
160-170
0.009
3
RP11-1437A8.4
hsa-miR-520h
0.757
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565847
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-396
0.029
0
XLOC_014244
hsa-miR-520h
0.756
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029809
Biotype: transcript isomorph
Gene id: XLOC_014244
Gene Name: XLOC_014244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1004-1021
0.029
1
RP11-221J22.1
hsa-miR-520h
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465215
Biotype: lincRNA
Gene id: ENSG00000214407
Gene Name: RP11-221J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1966-1980
0.010
1
6mer
1395-1410
0.005
2
6mer
471-480
0.005
1
6mer
1575-1601
0.005
1
6mer
1698-1720
0.004
1
XLOC_011476
hsa-miR-520h
0.756
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023277
Biotype: transcript isomorph
Gene id: XLOC_011476
Gene Name: XLOC_011476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-78
0.017
0
6mer
2547-2567
0.005
0
6mer
2095-2112
0.004
0
6mer
447-465
0.004
1
LINC01203
hsa-miR-520h
0.756
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000419566
Biotype: lincRNA
Gene id: ENSG00000226985
Gene Name: LINC01203
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-539
0.024
2
6mer
109-124
0.005
1
RP11-221J22.2
hsa-miR-520h
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483840
Biotype: lincRNA
Gene id: ENSG00000241280
Gene Name: RP11-221J22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1803-1817
0.009
1
6mer
308-317
0.006
1
6mer
1232-1247
0.005
2
6mer
1412-1438
0.004
1
6mer
1535-1557
0.004
1
RP11-435J9.2
hsa-miR-520h
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611703
Biotype: lincRNA
Gene id: ENSG00000274340
Gene Name: RP11-435J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-316
0.029
1
FMR1-AS1
hsa-miR-520h
0.755
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000594922
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1625-1650
0.010
4
7mer
250-266
0.009
4
6mer
79-103
0.007
3
6mer
700-722
0.004
3
BCYRN1
hsa-miR-520h
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-344
0.012
0
7mer
12216-12235
0.003
0
8mer
11244-11261
0.003
1
8mer
2697-2715
0.003
0
7mer
7919-7940
0.003
0
6mer
8967-8987
0.002
1
6mer
5522-5548
0.002
2
6mer
6581-6600
0.001
0
CTD-2378E12.1
hsa-miR-520h
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617693
Biotype: lincRNA
Gene id: ENSG00000273674
Gene Name: CTD-2378E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-79
0.019
0
6mer
429-456
0.010
3
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