LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
RP11-379B18.6
hsa-miR-520h
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610060
Biotype: lincRNA
Gene id: ENSG00000272840
Gene Name: RP11-379B18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-338
0.016
1
7mer
96-116
0.011
1
6mer
58-84
0.003
Not Conserved
XLOC_010017
hsa-miR-520h
0.761
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2061-2073
0.020
5
6mer
317-336
0.005
2
6mer
287-309
0.004
0
SNORD4A
hsa-miR-520h
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582718
Biotype: antisense
Gene id: ENSG00000264577
Gene Name: SNORD4A
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-660
0.016
0
6mer
633-648
0.008
11
8mer
459-477
0.005
1
GS1-304P7.3
hsa-miR-520h
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609032
Biotype: lincRNA
Gene id: ENSG00000273198
Gene Name: GS1-304P7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
233-247
0.021
1
6mer
186-211
0.008
0
LINC01004
hsa-miR-520h
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
26-30
0.008
1
6mer
270-285
0.005
1
6mer
8382-8404
0.003
2
7mer
8333-8350
0.003
0
6mer
5301-5319
0.002
1
6mer
1221-1234
0.002
0
6mer
4939-4957
0.001
1
6mer
1415-1429
0.001
0
6mer
4501-4518
0.001
Not Conserved
8mer+wobble
2680-2701
0.001
1
6mer
4479-4499
0.001
1
6mer
4909-4931
0.001
0
EMX2OS
hsa-miR-520h
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-65
0.012
0
7mer
6061-6085
0.008
1
6mer
797-807
0.005
1
7mer
2845-2853
0.003
1
6mer
5897-5912
0.001
1
6mer
1588-1610
0.001
Not Conserved
RP11-348N5.9
hsa-miR-520h
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619110
Biotype: antisense
Gene id: ENSG00000278601
Gene Name: RP11-348N5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-537
0.030
2
XLOC_009034
hsa-miR-520h
0.760
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019201
Biotype: transcript isomorph
Gene id: XLOC_009034
Gene Name: XLOC_009034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-177
0.016
0
7mer
181-204
0.014
2
MAGI2-AS3
hsa-miR-520h
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451809
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-656
0.030
2
RP5-965G21.3
hsa-miR-520h
0.760
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613361
Biotype: lincRNA
Gene id: ENSG00000277938
Gene Name: RP5-965G21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2520-2536
0.009
0
8mer
1533-1551
0.007
0
8mer
2319-2336
0.005
0
7mer
2610-2629
0.005
0
6mer
2579-2598
0.004
0
XLOC_001192
hsa-miR-520h
0.759
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001806
Biotype: transcript isomorph
Gene id: XLOC_001192
Gene Name: XLOC_001192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-474
0.029
1
XLOC_014038
hsa-miR-520h
0.759
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028904
Biotype: transcript isomorph
Gene id: XLOC_014038
Gene Name: XLOC_014038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-535
0.012
1
8mer
249-268
0.007
0
6mer
327-335
0.005
1
6mer
791-812
0.003
4
6mer
808-831
0.003
0
AC003003.5
hsa-miR-520h
0.759
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000468219
Biotype: sense_intronic
Gene id: ENSG00000188477
Gene Name: AC003003.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
823-838
0.009
5
6mer
461-485
0.008
9
7mer
2238-2260
0.007
0
8mer
1643-1660
0.006
1
CTD-2527I21.15
hsa-miR-520h
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616460
Biotype: lincRNA
Gene id: ENSG00000179066
Gene Name: CTD-2527I21.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1314-1331
0.014
0
7mer
990-1011
0.006
1
6mer
1179-1197
0.005
3
6mer
384-406
0.004
2
XLOC_000746
hsa-miR-520h
0.759
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001430
Biotype: transcript isomorph
Gene id: XLOC_000746
Gene Name: XLOC_000746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-331
0.008
1
7mer
620-631
0.007
0
6mer
3217-3240
0.004
0
7mer
508-531
0.004
0
6mer
2949-2956
0.004
0
6mer
1780-1799
0.001
Not Conserved
6mer
1520-1539
0.001
0
6mer
1964-1989
0.001
0
RP11-12A16.3
hsa-miR-520h
0.759
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437097
Biotype: antisense
Gene id: ENSG00000227068
Gene Name: RP11-12A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
292-302
0.015
2
7mer
53-67
0.015
0
RP5-1186N24.3
hsa-miR-520h
0.759
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000499525
Biotype: antisense
Gene id: ENSG00000246350
Gene Name: RP5-1186N24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2063-2076
0.016
2
6mer
529-540
0.009
3
7mer
654-675
0.003
0
6mer
1784-1793
0.002
0
XLOC_002749
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006148
Biotype: transcript isomorph
Gene id: XLOC_002749
Gene Name: XLOC_002749
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2755-2775
0.021
0
6mer
2413-2425
0.003
1
6mer
950-972
0.003
1
6mer
1704-1713
0.003
2
AP001442.2
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000599572
Biotype: antisense
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-229
0.029
0
CTD-2013N24.2
hsa-miR-520h
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597950
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
606-621
0.016
10
8mer
207-213
0.013
1
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