LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
RP11-887P2.5
hsa-miR-520h
0.768
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1263-1277
0.010
2
8mer
1445-1467
0.009
1
7mer
579-603
0.006
1
7mer
1020-1042
0.005
0
NNT-AS1
hsa-miR-520h
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513560
Biotype: antisense
Gene id: ENSG00000248092
Gene Name: NNT-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4626-4653
0.009
8
6mer
148-170
0.006
1
6mer
531-542
0.004
1
6mer
294-308
0.004
Not Conserved
8mer
2702-2721
0.004
1
6mer
1518-1530
0.002
1
6mer
1713-1724
0.002
0
RP11-1L9.1
hsa-miR-520h
0.768
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420403
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
295-311
0.030
1
AC087430.1
hsa-miR-520h
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-171
0.014
1
8mer
3437-3454
0.007
1
6mer
542-569
0.004
1
6mer
2809-2829
0.003
0
6mer
1427-1445
0.002
2
RP11-416O18.2
hsa-miR-520h
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462382
Biotype: lincRNA
Gene id: ENSG00000240478
Gene Name: RP11-416O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-191
0.030
5
XLOC_005466
hsa-miR-520h
0.767
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011192
Biotype: transcript isomorph
Gene id: XLOC_005466
Gene Name: XLOC_005466
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2411-2425
0.020
0
8mer
929-942
0.006
1
7mer
1950-1969
0.005
0
XLOC_004924
hsa-miR-520h
0.767
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
284-306
0.005
1
8mer
1516-1535
0.005
1
8mer
8118-8135
0.004
1
8mer
5763-5780
0.003
1
8mer
2405-2422
0.003
1
6mer
9928-9941
0.003
5
6mer
10070-10095
0.002
4
6mer
7124-7139
0.002
0
6mer
3496-3506
0.002
1
6mer
10108-10134
0.002
0
CTD-2013N24.2
hsa-miR-520h
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598783
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
575-590
0.016
10
8mer
130-136
0.014
1
MAGI2-AS3
hsa-miR-520h
0.767
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422093
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
639-654
0.030
2
FMR1-AS1
hsa-miR-520h
0.766
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000601841
Biotype: retained_intron
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-266
0.010
4
6mer
2007-2032
0.009
4
6mer
79-103
0.007
3
6mer
700-722
0.004
3
LINC00645
hsa-miR-520h
0.765
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557399
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
671-676
0.007
1
6mer
3457-3477
0.007
1
7mer
2043-2068
0.007
1
6mer
2888-2909
0.003
0
6mer
1058-1072
0.002
2
8mer+mismatch
891-909
0.002
0
6mer
1731-1736
0.002
0
MAGI2-AS3
hsa-miR-520h
0.765
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
700-715
0.018
2
7mer
5702-5717
0.008
1
7mer
1947-1966
0.003
3
6mer
5833-5855
0.002
3
XLOC_001508
hsa-miR-520h
0.765
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003719
Biotype: transcript isomorph
Gene id: XLOC_001508
Gene Name: XLOC_001508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2828-2847
0.007
8
6mer
918-932
0.007
11
6mer
3583-3608
0.006
5
8mer
3143-3160
0.006
1
6mer
2830-2857
0.004
13
AP001442.2
hsa-miR-520h
0.765
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596669
Biotype: retained_intron
Gene id: ENSG00000233783
Gene Name: AP001442.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
672-697
0.030
0
RP5-1050E16.2
hsa-miR-520h
0.764
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421297
Biotype: lincRNA
Gene id: ENSG00000226206
Gene Name: RP5-1050E16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
684-708
0.016
1
6mer
737-758
0.005
0
6mer
304-330
0.005
3
6mer
810-830
0.004
0
RP5-1022J11.2
hsa-miR-520h
0.764
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416237
Biotype: lincRNA
Gene id: ENSG00000232465
Gene Name: RP5-1022J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-49
0.030
2
XLOC_004205
hsa-miR-520h
0.763
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008689
Biotype: transcript isomorph
Gene id: XLOC_004205
Gene Name: XLOC_004205
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2737-2742
0.008
3
7mer
1576-1598
0.006
1
7mer
1156-1168
0.004
1
6mer
601-615
0.003
1
6mer
2453-2458
0.003
2
6mer
4022-4039
0.002
1
7mer
2416-2438
0.002
0
6mer
2632-2659
0.001
2
RP11-44F14.8
hsa-miR-520h
0.763
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-521
0.020
1
6mer
894-916
0.010
1
CTD-2311B13.2
hsa-miR-520h
0.763
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549951
Biotype: lincRNA
Gene id: ENSG00000258265
Gene Name: CTD-2311B13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-270
0.030
1
AC002454.1
hsa-miR-520h
0.763
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110086.1
Biotype: antisense
Gene id: NR_110086.1 (gene)
Gene Name: AC002454.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
758-780
0.027
8
6mer
371-391
0.003
0
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