LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-520h


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-354P11.2
hsa-miR-520h
0.775
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577420
Biotype: antisense
Gene id: ENSG00000266120
Gene Name: RP11-354P11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-175
0.031
3
SNHG14
hsa-miR-520h
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7424-7439
0.008
3
7mer
5648-5661
0.007
4
7mer
6953-6974
0.007
1
6mer
7493-7519
0.004
1
6mer
1007-1024
0.003
0
6mer
2279-2302
0.002
1
RP11-930P14.1
hsa-miR-520h
0.774
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520418
Biotype: antisense
Gene id: ENSG00000253389
Gene Name: RP11-930P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-408
0.024
1
8mer
531-545
0.007
1
XLOC_005748
hsa-miR-520h
0.774
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012190
Biotype: transcript isomorph
Gene id: XLOC_005748
Gene Name: XLOC_005748
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-34
0.010
0
7mer
279-298
0.008
1
6mer
2189-2214
0.007
5
6mer
1534-1551
0.003
3
6mer
483-497
0.003
1
RP11-96C23.14
hsa-miR-520h
0.774
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444180
Biotype: processed_transcript
Gene id: ENSG00000272508
Gene Name: RP11-96C23.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-47
0.028
1
6mer
652-671
0.003
1
RP4-717I23.3
hsa-miR-520h
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602488
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-95
0.026
8
6mer
244-258
0.005
1
RP11-7O11.3
hsa-miR-520h
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412378
Biotype: antisense
Gene id: ENSG00000237950
Gene Name: RP11-7O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-18
0.031
1
RP11-977B10.2
hsa-miR-520h
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549023
Biotype: antisense
Gene id: ENSG00000258101
Gene Name: RP11-977B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-62
0.020
1
6mer
265-291
0.011
6
RP1-45N11.1
hsa-miR-520h
0.773
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569865
Biotype: lincRNA
Gene id: ENSG00000260271
Gene Name: RP1-45N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-282
0.018
3
7mer
515-534
0.008
3
8mer
801-818
0.005
1
CTD-2291D10.4
hsa-miR-520h
0.773
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594318
Biotype: lincRNA
Gene id: ENSG00000267886
Gene Name: CTD-2291D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-104
0.027
0
7mer
465-481
0.004
Not Conserved
RP13-20L14.1
hsa-miR-520h
0.773
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566971
Biotype: lincRNA
Gene id: ENSG00000260011
Gene Name: RP13-20L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-270
0.015
0
7mer
190-205
0.015
0
RP11-744K17.1
hsa-miR-520h
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3592-3598
0.015
1
6mer
1424-1449
0.004
1
6mer
3176-3181
0.004
1
6mer
1737-1752
0.004
1
6mer
2725-2745
0.002
0
6mer
2042-2059
0.002
0
RP11-61L19.1
hsa-miR-520h
0.772
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580891
Biotype: sense_intronic
Gene id: ENSG00000266805
Gene Name: RP11-61L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3382-3399
0.013
1
6mer
136-150
0.007
1
6mer
749-762
0.004
2
6mer
205-224
0.004
0
6mer
2291-2295
0.002
0
RP11-297L17.2
hsa-miR-520h
0.771
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566645
Biotype: lincRNA
Gene id: ENSG00000260963
Gene Name: RP11-297L17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-489
0.031
2
XLOC_003840
hsa-miR-520h
0.771
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008388
Biotype: transcript isomorph
Gene id: XLOC_003840
Gene Name: XLOC_003840
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1846-1862
0.011
4
6mer
1949-1961
0.007
4
6mer
1967-1984
0.005
2
6mer
1540-1559
0.004
1
6mer
772-796
0.003
2
LINC00645
hsa-miR-520h
0.771
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
643-648
0.008
1
6mer
3429-3449
0.007
1
7mer
2015-2040
0.007
1
6mer
2860-2881
0.003
0
6mer
1030-1044
0.002
2
8mer+mismatch
863-881
0.002
0
6mer
1703-1708
0.002
0
RP11-545A16.1
hsa-miR-520h
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569644
Biotype: antisense
Gene id: ENSG00000261250
Gene Name: RP11-545A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
179-202
0.022
0
6mer
2905-2917
0.004
2
6mer
2897-2917
0.003
2
6mer
1613-1628
0.002
3
EMX2OS
hsa-miR-520h
0.770
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-65
0.012
0
7mer
6061-6085
0.009
1
6mer
797-807
0.005
1
7mer
2845-2853
0.002
1
6mer
5897-5912
0.002
1
6mer
1588-1610
0.001
Not Conserved
CTD-3099C6.9
hsa-miR-520h
0.769
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598322
Biotype: sense_intronic
Gene id: ENSG00000269825
Gene Name: CTD-3099C6.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-100
0.006
0
7mer
987-1008
0.005
0
6mer
2495-2519
0.004
0
6mer
2411-2435
0.004
1
6mer
354-369
0.004
0
6mer
247-258
0.004
0
8mer
1393-1412
0.003
0
XLOC_012664
hsa-miR-520h
0.769
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026615
Biotype: transcript isomorph
Gene id: XLOC_012664
Gene Name: XLOC_012664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1026-1048
0.018
1
6mer
72-83
0.009
4
6mer
2512-2536
0.004
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept