LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
UG0898H09
hsa-miR-520h
0.782
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622794
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3559-3573
0.022
1
6mer
3182-3198
0.004
4
6mer
3109-3127
0.004
3
6mer
1923-1938
0.002
1
GS1-124K5.3
hsa-miR-520h
0.780
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412091
Biotype: lincRNA
Gene id: ENSG00000223473
Gene Name: GS1-124K5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-118
0.031
1
CTD-2340D6.1
hsa-miR-520h
0.780
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523226
Biotype: sense_intronic
Gene id: ENSG00000253532
Gene Name: CTD-2340D6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-108
0.017
1
6mer
442-453
0.014
3
CTD-2368P22.1
hsa-miR-520h
0.779
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000546949
Biotype: antisense
Gene id: ENSG00000176593
Gene Name: CTD-2368P22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2228-2254
0.019
1
7mer
88-99
0.007
0
6mer
1899-1917
0.005
1
LINC00948
hsa-miR-520h
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000621566
Biotype: retained_intron
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-74
0.031
4
FLJ37035
hsa-miR-520h
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000527483
Biotype: lincRNA
Gene id: ENSG00000224023
Gene Name: FLJ37035
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-614
0.031
5
RP11-90D4.3
hsa-miR-520h
0.779
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535746
Biotype: lincRNA
Gene id: ENSG00000256101
Gene Name: RP11-90D4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-518
0.016
0
7mer
522-545
0.015
2
FAM53B-AS1
hsa-miR-520h
0.778
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448422
Biotype: antisense
Gene id: ENSG00000233334
Gene Name: FAM53B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1201-1225
0.027
3
6mer
1201-1217
0.004
1
RP11-159D12.2
hsa-miR-520h
0.778
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585065
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1502-1519
0.008
3
6mer
4642-4659
0.005
2
6mer
1066-1088
0.004
5
7mer
1773-1785
0.003
1
7mer
2394-2414
0.003
2
6mer
3892-3912
0.003
2
6mer
3617-3635
0.002
2
6mer
2301-2321
0.001
2
XLOC_007595
hsa-miR-520h
0.778
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016205
Biotype: transcript isomorph
Gene id: XLOC_007595
Gene Name: XLOC_007595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
373-389
0.024
2
6mer
483-503
0.007
1
NPSR1-AS1
hsa-miR-520h
0.778
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431669
Biotype: antisense
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-54
0.015
0
6mer
333-345
0.006
1
6mer
97-115
0.006
1
6mer
303-323
0.005
1
RP11-298I3.4
hsa-miR-520h
0.778
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556503
Biotype: antisense
Gene id: ENSG00000258457
Gene Name: RP11-298I3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-259
0.011
8
6mer
146-164
0.008
9
6mer
593-609
0.007
2
7mer
640-652
0.005
2
CTC-459F4.3
hsa-miR-520h
0.777
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2214-2236
0.017
0
6mer
1378-1400
0.008
0
6mer
1209-1225
0.006
0
CTA-228A9.4
hsa-miR-520h
0.777
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10033-10050
0.003
1
7mer
19466-19485
0.003
0
8mer
10718-10735
0.003
1
8mer
6114-6131
0.002
1
7mer
5575-5592
0.002
1
8mer
1614-1631
0.002
1
6mer
1267-1280
0.002
1
8mer
4083-4104
0.002
0
6mer
15653-15669
0.002
0
8mer
14155-14172
0.002
Not Conserved
6mer
6594-6614
0.001
1
6mer
18583-18610
0.001
0
6mer
18437-18446
0.001
1
6mer
7774-7799
0.001
1
6mer
7277-7300
0.001
1
6mer
6673-6694
0.001
1
AC079613.1
hsa-miR-520h
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431708
Biotype: sense_overlapping
Gene id: ENSG00000223523
Gene Name: AC079613.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
490-506
0.014
0
7mer
79-87
0.013
4
6mer
151-175
0.005
0
XLOC_004399
hsa-miR-520h
0.777
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009407
Biotype: transcript isomorph
Gene id: XLOC_004399
Gene Name: XLOC_004399
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-98
0.011
2
7mer
562-582
0.007
1
7mer
2147-2170
0.006
0
6mer
2036-2050
0.004
2
7mer
522-538
0.003
0
LINC00115
hsa-miR-520h
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000473798
Biotype: lincRNA
Gene id: ENSG00000225880
Gene Name: LINC00115
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-70
0.016
1
6mer
99-125
0.011
1
6mer
167-179
0.004
Not Conserved
LINC00560
hsa-miR-520h
0.776
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564593
Biotype: lincRNA
Gene id: ENSG00000261666
Gene Name: LINC00560
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-154
0.026
0
8mer
775-787
0.005
Not Conserved
RP11-6N13.1
hsa-miR-520h
0.775
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503650
Biotype: lincRNA
Gene id: ENSG00000251574
Gene Name: RP11-6N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
160-179
0.015
8
6mer
248-263
0.011
9
6mer
256-277
0.005
1
CTA-796E4.3
hsa-miR-520h
0.775
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000420391
Biotype: lincRNA
Gene id: ENSG00000236464
Gene Name: CTA-796E4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-138
0.031
2
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