LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
RP11-807G9.2
hsa-miR-520h
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413148
Biotype: sense_intronic
Gene id: ENSG00000241326
Gene Name: RP11-807G9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-375
0.020
0
7mer
231-253
0.010
3
6mer
248-271
0.004
1
TMEM256-PLSCR3
hsa-miR-520h
0.798
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037719.1
Biotype: sense
Gene id: NR_037719.1 (gene)
Gene Name: TMEM256-PLSCR3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-26
0.014
5
8mer
203-220
0.008
3
6mer
1647-1671
0.007
7
6mer
785-805
0.004
6
LINC01125
hsa-miR-520h
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609004
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-99
0.023
1
6mer
616-637
0.010
5
XLOC_012598
hsa-miR-520h
0.798
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1912-1925
0.023
0
8mer
1298-1304
0.010
Not Conserved
RP11-439E19.10
hsa-miR-520h
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567832
Biotype: antisense
Gene id: ENSG00000260855
Gene Name: RP11-439E19.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3137-3154
0.011
2
7mer
437-459
0.009
2
7mer
2831-2852
0.009
4
8mer
2000-2017
0.003
1
RP11-358N2.2
hsa-miR-520h
0.797
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612444
Biotype: lincRNA
Gene id: ENSG00000277692
Gene Name: RP11-358N2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-236
0.033
1
TTTY10
hsa-miR-520h
0.797
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000439472
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-129
0.033
0
AC007308.6
hsa-miR-520h
0.797
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1549-1563
0.029
2
8mer
517-542
0.004
Not Conserved
GS1-358P8.4
hsa-miR-520h
0.796
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4726-4739
0.008
6
6mer
4640-4655
0.005
1
7mer
4145-4166
0.004
0
6mer
2731-2736
0.004
4
6mer
4427-4444
0.004
1
7mer
571-588
0.003
Not Conserved
7mer
1107-1132
0.003
0
7mer
2234-2256
0.003
1
TIPARP-AS1
hsa-miR-520h
0.796
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492937
Biotype: antisense
Gene id: ENSG00000243926
Gene Name: TIPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-344
0.033
4
RP11-77P16.4
hsa-miR-520h
0.796
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504808
Biotype: lincRNA
Gene id: ENSG00000249846
Gene Name: RP11-77P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1473-1486
0.014
3
8mer
204-221
0.009
0
6mer
295-315
0.006
1
6mer
1482-1508
0.004
1
AC010974.3
hsa-miR-520h
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450509
Biotype: antisense
Gene id: ENSG00000230065
Gene Name: AC010974.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-100
0.033
2
XLOC_007808
hsa-miR-520h
0.796
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016443
Biotype: transcript isomorph
Gene id: XLOC_007808
Gene Name: XLOC_007808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-276
0.022
2
6mer
225-236
0.007
4
6mer
3560-3569
0.003
0
6mer
1995-2016
0.001
1
RP11-166D19.1
hsa-miR-520h
0.796
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529823
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-79
0.012
5
7mer
46-72
0.009
1
6mer
3241-3256
0.007
5
6mer
1106-1113
0.003
1
6mer
954-974
0.002
1
6mer
809-833
0.001
1
FAM226B
hsa-miR-520h
0.795
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602508
Biotype: sense_intronic
Gene id: ENSG00000269911
Gene Name: FAM226B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
807-828
0.026
1
6mer
1113-1136
0.007
1
PCAT19
hsa-miR-520h
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
381-401
0.019
1
6mer
311-334
0.014
1
RP11-508N22.12
hsa-miR-520h
0.795
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
785-799
0.011
1
8mer
4514-4531
0.009
1
6mer
697-716
0.008
1
6mer
2917-2921
0.004
1
6mer
4647-4667
0.001
0
SLC26A4-AS1
hsa-miR-520h
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440512
Biotype: antisense
Gene id: ENSG00000233705
Gene Name: SLC26A4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3471-3490
0.013
0
7mer
705-729
0.007
1
7mer
2076-2093
0.007
4
6mer
3093-3118
0.004
1
6mer
2350-2361
0.001
1
8mer+mismatch
2465-2485
0.001
0
RP11-166D19.1
hsa-miR-520h
0.794
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-82
0.012
5
7mer
49-75
0.009
1
6mer
3265-3280
0.006
5
6mer
1109-1116
0.003
1
6mer
957-977
0.002
1
6mer
812-836
0.001
1
RP4-565E6.1
hsa-miR-520h
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000596091
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
602-614
0.021
5
6mer
654-666
0.009
4
6mer
82-103
0.003
Not Conserved
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