LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
CTA-243E7.1
hsa-miR-520h
0.805
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
855-874
0.008
1
6mer
331-350
0.006
1
8mer
12200-12217
0.005
1
6mer
538-555
0.004
1
8mer
5780-5797
0.004
1
8mer
4007-4024
0.003
1
8mer
8321-8338
0.002
0
6mer
1627-1651
0.001
Not Conserved
6mer
7773-7798
0.001
1
RP11-586K12.11
hsa-miR-520h
0.805
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565347
Biotype: lincRNA
Gene id: ENSG00000261569
Gene Name: RP11-586K12.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
413-432
0.017
0
6mer
382-406
0.016
0
RBMS3-AS1
hsa-miR-520h
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414547
Biotype: antisense
Gene id: ENSG00000235593
Gene Name: RBMS3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-32
0.034
3
RP11-1437A8.6
hsa-miR-520h
0.804
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569199
Biotype: lincRNA
Gene id: ENSG00000261507
Gene Name: RP11-1437A8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
109-128
0.017
0
6mer
135-159
0.017
0
RP11-506B6.6
hsa-miR-520h
0.804
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433684
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-339
0.029
2
6mer
209-223
0.005
3
RP11-277P12.10
hsa-miR-520h
0.803
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539009
Biotype: lincRNA
Gene id: ENSG00000256288
Gene Name: RP11-277P12.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-74
0.034
0
LINC00282
hsa-miR-520h
0.802
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_027048.1
Biotype: lincRNA
Gene id: NR_027048.1 (gene)
Gene Name: LINC00282
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-28
0.016
3
7mer
3842-3864
0.007
2
7mer
2186-2208
0.004
0
6mer
75-99
0.004
0
6mer
1222-1240
0.002
Not Conserved
LINC00906
hsa-miR-520h
0.802
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589921
Biotype: lincRNA
Gene id: ENSG00000267339
Gene Name: LINC00906
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1194-1216
0.014
0
6mer
3377-3402
0.006
0
6mer
3150-3173
0.005
2
6mer
2579-2596
0.004
1
6mer
2890-2901
0.003
1
6mer
1311-1328
0.001
2
6mer
1225-1242
0.001
0
RP11-111F5.8
hsa-miR-520h
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
45-62
0.020
1
6mer
2801-2822
0.007
0
6mer
2986-3009
0.007
0
XLOC_006133
hsa-miR-520h
0.802
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013490
Biotype: transcript isomorph
Gene id: XLOC_006133
Gene Name: XLOC_006133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-297
0.020
1
7mer
176-198
0.014
1
LINC01235
hsa-miR-520h
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604724
Biotype: lincRNA
Gene id: ENSG00000270547
Gene Name: LINC01235
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-654
0.023
4
7mer
1771-1777
0.007
1
8mer
1369-1386
0.003
0
MLK7-AS1
hsa-miR-520h
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423106
Biotype: antisense
Gene id: ENSG00000238133
Gene Name: MLK7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-565
0.026
11
6mer
533-546
0.008
12
CTD-2561J22.5
hsa-miR-520h
0.802
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2563-2568
0.013
1
7mer
1013-1033
0.008
1
6mer
4074-4094
0.005
0
6mer
3535-3547
0.004
1
6mer
3661-3670
0.004
0
BMS1P4
hsa-miR-520h
0.801
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000580790
Biotype: processed_transcript
Gene id: ENSG00000271816
Gene Name: BMS1P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1560-1583
0.033
2
RP11-167J8.3
hsa-miR-520h
0.801
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532530
Biotype: lincRNA
Gene id: ENSG00000254972
Gene Name: RP11-167J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-83
0.017
2
8mer
86-98
0.016
0
U91328.22
hsa-miR-520h
0.801
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000608919
Biotype: lincRNA
Gene id: ENSG00000272810
Gene Name: U91328.22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-203
0.033
2
XLOC_013995
hsa-miR-520h
0.800
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-598
0.016
0
7mer
665-670
0.015
0
6mer
1055-1079
0.003
0
RP11-278H7.3
hsa-miR-520h
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440148
Biotype: lincRNA
Gene id: ENSG00000237759
Gene Name: RP11-278H7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-27
0.033
9
CTB-25J19.1
hsa-miR-520h
0.799
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612322
Biotype: lincRNA
Gene id: ENSG00000196589
Gene Name: CTB-25J19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-61
0.033
1
XLOC_000951
hsa-miR-520h
0.799
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001623
Biotype: transcript isomorph
Gene id: XLOC_000951
Gene Name: XLOC_000951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-219
0.033
3
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