LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
RP11-526A4.1
hsa-miR-520h
0.819
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511993
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-47
0.031
1
8mer
1242-1257
0.005
0
RP11-967K21.1
hsa-miR-520h
0.819
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617468
Biotype: antisense
Gene id: ENSG00000247934
Gene Name: RP11-967K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-320
0.015
1
6mer
751-772
0.004
2
7mer
1816-1827
0.004
1
6mer
1392-1418
0.003
2
6mer
1950-1969
0.003
1
6mer
1141-1159
0.003
3
6mer
1605-1615
0.003
Not Conserved
XLOC_008075
hsa-miR-520h
0.819
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016940
Biotype: transcript isomorph
Gene id: XLOC_008075
Gene Name: XLOC_008075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
190-213
0.019
0
6mer
314-341
0.016
0
CLRN1-AS1
hsa-miR-520h
0.818
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465576
Biotype: antisense
Gene id: ENSG00000239265
Gene Name: CLRN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1584-1601
0.007
1
6mer
1913-1933
0.007
4
6mer
52-79
0.007
6
6mer
420-446
0.005
5
6mer
1660-1682
0.003
0
6mer
889-908
0.003
1
6mer
611-635
0.002
1
RP11-231E6.1
hsa-miR-520h
0.818
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1186-1203
0.010
1
7mer
1415-1433
0.009
0
6mer
123-146
0.006
0
7mer
1144-1162
0.006
Not Conserved
6mer
1261-1280
0.005
1
RP5-827C21.6
hsa-miR-520h
0.818
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610233
Biotype: antisense
Gene id: ENSG00000273367
Gene Name: RP5-827C21.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-146
0.027
1
6mer
108-125
0.008
2
RP11-384P7.7
hsa-miR-520h
0.817
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3399-3422
0.015
0
7mer
2671-2688
0.010
0
7mer
254-280
0.008
1
6mer
1480-1503
0.002
1
RP4-565E6.1
hsa-miR-520h
0.817
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000622642
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-82
0.027
5
6mer
122-134
0.008
4
AC114776.3
hsa-miR-520h
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-70
0.017
0
6mer
3571-3581
0.009
1
8mer
1060-1079
0.008
0
RP11-379B18.5
hsa-miR-520h
0.817
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594843
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-79
0.019
0
7mer
40-63
0.016
3
RP11-762E8.1
hsa-miR-520h
0.816
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606986
Biotype: lincRNA
Gene id: ENSG00000271893
Gene Name: RP11-762E8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-209
0.035
3
XLOC_009990
hsa-miR-520h
0.816
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
992-1009
0.011
1
6mer
1218-1238
0.009
1
6mer
318-340
0.008
1
7mer
1100-1122
0.007
0
XLOC_000695
hsa-miR-520h
0.815
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-316
0.012
1
8mer
2876-2897
0.007
1
6mer
2993-3008
0.006
3
8mer
2004-2021
0.004
0
6mer
864-884
0.004
2
6mer
1725-1744
0.002
3
CTD-2310F14.1
hsa-miR-520h
0.815
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606813
Biotype: antisense
Gene id: ENSG00000271828
Gene Name: CTD-2310F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-226
0.021
0
7mer
409-433
0.008
1
8mer
1435-1452
0.006
1
XLOC_012011
hsa-miR-520h
0.815
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024730
Biotype: transcript isomorph
Gene id: XLOC_012011
Gene Name: XLOC_012011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5517-5534
0.007
1
8mer
5217-5236
0.007
1
6mer
5583-5602
0.007
3
8mer
3939-3956
0.004
1
6mer
1104-1125
0.003
2
6mer
676-696
0.003
1
9mer
446-468
0.003
0
HCCAT5
hsa-miR-520h
0.814
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569990
Biotype: lincRNA
Gene id: ENSG00000260880
Gene Name: HCCAT5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-416
0.035
9
LINC00282
hsa-miR-520h
0.814
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_027047.1
Biotype: lincRNA
Gene id: NR_027047.1 (gene)
Gene Name: LINC00282
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-28
0.017
3
7mer
3985-4007
0.007
2
7mer
2186-2208
0.004
0
6mer
75-99
0.004
0
6mer
1222-1240
0.002
Not Conserved
RP11-374M1.2
hsa-miR-520h
0.814
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612999
Biotype: retained_intron
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1282-1299
0.025
0
6mer
872-893
0.010
1
FLJ37035
hsa-miR-520h
0.813
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000525909
Biotype: lincRNA
Gene id: ENSG00000224023
Gene Name: FLJ37035
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-417
0.035
5
XLOC_011783
hsa-miR-520h
0.813
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024228
Biotype: transcript isomorph
Gene id: XLOC_011783
Gene Name: XLOC_011783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-416
0.035
9
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