LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
LINC01024
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522747
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-141
0.027
2
7mer
235-262
0.009
2
XLOC_000318
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001079
Biotype: transcript isomorph
Gene id: XLOC_000318
Gene Name: XLOC_000318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-166
0.010
1
7mer
4639-4661
0.005
4
7mer
2051-2060
0.004
1
6mer
891-910
0.004
4
8mer
7012-7031
0.003
1
8mer
6670-6695
0.003
1
6mer
1248-1273
0.002
0
6mer
5552-5570
0.002
1
6mer
3218-3224
0.002
0
6mer
3341-3352
0.002
1
PCAT19
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597702
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
298-318
0.020
1
6mer
228-251
0.016
1
RP11-1060G2.2
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000604017
Biotype: lincRNA
Gene id: ENSG00000271382
Gene Name: RP11-1060G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-149
0.013
1
7mer
2412-2436
0.009
0
6mer
339-358
0.007
4
7mer
1043-1063
0.005
Not Conserved
6mer
1306-1331
0.002
0
CTA-204B4.2
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000564464
Biotype: antisense
Gene id: ENSG00000259891
Gene Name: CTA-204B4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1820-1845
0.012
1
8mer
509-526
0.010
0
8mer
805-817
0.006
0
7mer
1327-1344
0.005
1
6mer
212-231
0.004
0
HNF1A-AS1
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537361
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-518
0.036
5
FAM226A
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026595.2
Biotype: sense
Gene id: NR_026595.2 (gene)
Gene Name: FAM226A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
660-681
0.024
1
6mer
1652-1668
0.007
2
RP3-523K23.2
hsa-miR-520h
0.828
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562834
Biotype: sense_overlapping
Gene id: ENSG00000261116
Gene Name: RP3-523K23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1130-1153
0.013
1
7mer
533-546
0.008
1
6mer
131-154
0.006
1
6mer
200-215
0.005
1
6mer
541-563
0.005
5
FAM226B
hsa-miR-520h
0.827
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026594.1
Biotype: sense
Gene id: NR_026594.1 (gene)
Gene Name: FAM226B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1342-1363
0.023
1
6mer
355-371
0.007
2
6mer
1648-1671
0.006
1
HLA-F-AS1
hsa-miR-520h
0.827
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458236
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
760-779
0.013
1
8mer
1528-1545
0.010
1
6mer
73-84
0.006
0
6mer
2726-2748
0.006
0
RP11-144G6.12
hsa-miR-520h
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000431840
Biotype: processed_transcript
Gene id: ENSG00000254929
Gene Name: RP11-144G6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-904
0.036
2
JAKMIP2-AS1
hsa-miR-520h
0.825
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038902.1
Biotype: antisense
Gene id: NR_038902.1 (gene)
Gene Name: JAKMIP2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-57
0.013
3
7mer
1544-1568
0.012
4
7mer
1078-1105
0.008
8
6mer
138-156
0.003
0
RP11-148I19.1
hsa-miR-520h
0.825
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527828
Biotype: lincRNA
Gene id: ENSG00000255300
Gene Name: RP11-148I19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-95
0.036
5
RNF144A-AS1
hsa-miR-520h
0.824
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424351
Biotype: retained_intron
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1426-1452
0.011
4
8mer
243-260
0.007
1
6mer
1037-1048
0.005
5
8mer
1874-1893
0.004
0
6mer
2714-2738
0.004
2
6mer
859-886
0.002
0
7mer
1771-1795
0.002
1
XLOC_013703
hsa-miR-520h
0.823
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-136
0.036
0
CTD-2561J22.5
hsa-miR-520h
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-47
0.036
1
XLOC_010750
hsa-miR-520h
0.822
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022417
Biotype: transcript isomorph
Gene id: XLOC_010750
Gene Name: XLOC_010750
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-533
0.020
2
6mer
325-348
0.008
1
6mer
94-112
0.007
1
RP11-464F9.1
hsa-miR-520h
0.821
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000399449
Biotype: processed_transcript
Gene id: ENSG00000242288
Gene Name: RP11-464F9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3458-3481
0.026
2
8mer
1097-1123
0.010
3
RP11-856M7.6
hsa-miR-520h
0.820
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584734
Biotype: lincRNA
Gene id: ENSG00000266604
Gene Name: RP11-856M7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
208-225
0.018
0
6mer
683-708
0.018
0
RP11-131K5.2
hsa-miR-520h
0.820
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1542-1556
0.013
1
6mer
1390-1416
0.012
1
6mer
425-447
0.007
0
6mer
1300-1322
0.004
0
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