LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
XLOC_012444
hsa-miR-520h
0.837
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025612
Biotype: transcript isomorph
Gene id: XLOC_012444
Gene Name: XLOC_012444
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-574
0.020
1
8mer
1078-1095
0.008
1
6mer
2122-2148
0.005
0
7mer
848-861
0.004
0
XLOC_013093
hsa-miR-520h
0.837
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027051
Biotype: transcript isomorph
Gene id: XLOC_013093
Gene Name: XLOC_013093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2965-2983
0.019
2
6mer
739-762
0.006
1
9mer
1419-1440
0.006
1
7mer
1395-1416
0.006
0
RP11-372E1.4
hsa-miR-520h
0.837
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476385
Biotype: antisense
Gene id: ENSG00000243818
Gene Name: RP11-372E1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1387-1404
0.015
1
6mer
1339-1358
0.010
5
8mer
643-660
0.008
1
6mer
1141-1164
0.003
0
6mer
440-460
0.002
0
RP3-412A9.17
hsa-miR-520h
0.836
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12832-12854
0.007
1
8mer
401-418
0.005
0
8mer
16278-16297
0.005
Not Conserved
8mer
1772-1789
0.004
1
7mer
886-903
0.004
0
7mer
6668-6694
0.003
1
7mer
2534-2559
0.003
0
8mer
9791-9808
0.002
0
8mer
4755-4772
0.002
0
6mer
6824-6845
0.001
0
6mer
6888-6907
0.001
0
CTC-369A16.2
hsa-miR-520h
0.835
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510004
Biotype: lincRNA
Gene id: ENSG00000251421
Gene Name: CTC-369A16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-114
0.037
3
TTC28-AS1
hsa-miR-520h
0.835
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433317
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2542-2567
0.019
3
8mer
314-332
0.016
5
6mer
1702-1713
0.002
4
XLOC_014347
hsa-miR-520h
0.835
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029677
Biotype: transcript isomorph
Gene id: XLOC_014347
Gene Name: XLOC_014347
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-118
0.037
3
RP11-53B2.1
hsa-miR-520h
0.834
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624889
Biotype: TEC
Gene id: ENSG00000267529
Gene Name: RP11-53B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-59
0.016
0
7mer
99-104
0.012
0
6mer
1459-1486
0.009
6
XLOC_007542
hsa-miR-520h
0.834
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016146
Biotype: transcript isomorph
Gene id: XLOC_007542
Gene Name: XLOC_007542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-50
0.026
10
7mer
159-182
0.012
1
RP11-379K17.4
hsa-miR-520h
0.832
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483289
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5808-5825
0.015
3
8mer
711-717
0.011
1
9mer
2703-2722
0.004
1
6mer
2937-2959
0.002
2
6mer
4749-4773
0.002
1
6mer
3254-3272
0.001
1
7mer
2847-2873
0.001
1
6mer
4681-4697
0.001
0
RP4-671O14.6
hsa-miR-520h
0.832
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-40
0.005
1
8mer
10532-10549
0.005
0
8mer
2754-2771
0.004
1
8mer
11048-11065
0.004
1
7mer
3404-3415
0.003
1
6mer
6497-6519
0.003
3
8mer
11395-11416
0.002
0
8mer
5172-5191
0.002
1
6mer
9232-9255
0.002
2
6mer
4803-4825
0.002
1
6mer
7105-7121
0.002
0
6mer
12197-12219
0.001
3
6mer
7300-7319
0.001
1
6mer
12392-12419
0.001
0
CCDC39-AS1
hsa-miR-520h
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495357
Biotype: antisense
Gene id: ENSG00000243187
Gene Name: CCDC39-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-161
0.037
6
RP11-1E4.1
hsa-miR-520h
0.831
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562143
Biotype: antisense
Gene id: ENSG00000260093
Gene Name: RP11-1E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3112-3139
0.019
3
7mer
720-740
0.007
1
7mer
2650-2671
0.007
1
6mer
1312-1334
0.002
1
6mer
1003-1023
0.002
1
RP11-336K24.12
hsa-miR-520h
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610146
Biotype: antisense
Gene id: ENSG00000273002
Gene Name: RP11-336K24.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1686-1694
0.022
3
8mer
2010-2027
0.011
1
6mer
967-992
0.004
3
SOX2-OT
hsa-miR-520h
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498731
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3366-3388
0.016
7
7mer
3120-3141
0.014
6
6mer
185-205
0.006
1
6mer
1402-1414
0.001
0
XLOC_005180
hsa-miR-520h
0.831
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011699
Biotype: transcript isomorph
Gene id: XLOC_005180
Gene Name: XLOC_005180
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-138
0.015
4
8mer
498-514
0.010
1
7mer
610-631
0.008
0
6mer
330-355
0.004
1
RP11-34P13.13
hsa-miR-520h
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-103
0.022
0
6mer
1164-1186
0.009
1
6mer
861-878
0.006
0
ENTPD1-AS1
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454638
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-568
0.016
0
7mer
2685-2711
0.008
0
7mer
1630-1654
0.006
1
7mer
1984-2008
0.003
1
6mer
2375-2394
0.003
1
6mer
1599-1621
0.001
1
RP11-799D4.4
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590478
Biotype: antisense
Gene id: ENSG00000266947
Gene Name: RP11-799D4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-574
0.019
1
8mer
1078-1095
0.008
1
6mer
2106-2132
0.005
0
7mer
848-861
0.004
0
XLOC_010769
hsa-miR-520h
0.829
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2709-2720
0.018
1
6mer
364-374
0.014
1
6mer
2145-2168
0.005
0
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