LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520h


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Gene
miRNA
Score
DIANA Links
AC005154.6
hsa-miR-520h
0.854
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13808-13823
0.006
0
6mer
355-360
0.006
1
7mer
2612-2634
0.003
1
6mer
662-683
0.003
3
8mer
7087-7106
0.003
1
8mer
12161-12178
0.003
1
8mer
11878-11895
0.003
1
6mer
970-985
0.002
0
6mer
10065-10090
0.002
0
6mer
12541-12565
0.002
1
6mer
4327-4347
0.002
0
6mer
904-923
0.002
1
6mer
5111-5135
0.001
1
6mer
4207-4228
0.001
0
RP11-65D24.2
hsa-miR-520h
0.854
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000375713
Biotype: lincRNA
Gene id: ENSG00000204398
Gene Name: RP11-65D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-401
0.040
1
AC012593.1
hsa-miR-520h
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592523
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
705-731
0.020
1
6mer
654-679
0.019
1
XLOC_004053
hsa-miR-520h
0.853
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008556
Biotype: transcript isomorph
Gene id: XLOC_004053
Gene Name: XLOC_004053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-586
0.017
0
7mer
2872-2894
0.011
1
6mer
2890-2910
0.006
0
7mer
711-720
0.004
Not Conserved
6mer
1578-1598
0.003
1
VCAN-AS1
hsa-miR-520h
0.852
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513899
Biotype: antisense
Gene id: ENSG00000249835
Gene Name: VCAN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-329
0.039
7
LCMT1-AS2
hsa-miR-520h
0.852
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1217-1241
0.015
1
7mer
1122-1134
0.012
1
8mer
944-961
0.008
0
6mer
675-691
0.005
0
XLOC_004978
hsa-miR-520h
0.851
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010460
Biotype: transcript isomorph
Gene id: XLOC_004978
Gene Name: XLOC_004978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1396-1413
0.016
9
6mer
35-62
0.009
4
8mer
747-768
0.009
1
7mer
649-674
0.005
1
PART1
hsa-miR-520h
0.850
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504876
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-31
0.012
2
7mer
312-332
0.009
1
7mer
1635-1650
0.004
1
7mer
272-288
0.004
0
6mer
5142-5158
0.003
0
6mer
3742-3759
0.003
4
6mer
4099-4119
0.003
3
8mer
3397-3414
0.002
1
HNF1A-AS1
hsa-miR-520h
0.850
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619441
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-337
0.039
5
XLOC_011494
hsa-miR-520h
0.850
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
922-948
0.021
1
6mer
8-33
0.018
1
RP11-363G2.4
hsa-miR-520h
0.849
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1803-1826
0.027
0
6mer
1186-1195
0.012
0
AC105339.1
hsa-miR-520h
0.849
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440479
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-241
0.031
6
8mer
1797-1814
0.005
1
6mer
710-732
0.003
1
XLOC_007098
hsa-miR-520h
0.848
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014518
Biotype: transcript isomorph
Gene id: XLOC_007098
Gene Name: XLOC_007098
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-158
0.013
1
7mer
113-118
0.012
1
6mer
2274-2297
0.005
1
6mer
1473-1494
0.003
2
6mer
504-530
0.002
0
6mer
1376-1397
0.001
0
6mer
1240-1259
0.001
1
6mer
1202-1221
0.001
1
6mer
1164-1183
0.001
0
MAGI2-AS3
hsa-miR-520h
0.847
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448636
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
605-620
0.031
2
7mer
68-80
0.007
1
XLOC_003808
hsa-miR-520h
0.847
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007688
Biotype: transcript isomorph
Gene id: XLOC_003808
Gene Name: XLOC_003808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8726-8752
0.010
4
7mer
6132-6149
0.006
1
6mer
516-529
0.004
3
6mer
8252-8278
0.004
3
8mer
1955-1972
0.003
1
8mer
4677-4696
0.003
1
6mer
373-400
0.003
0
8mer
1441-1460
0.002
0
6mer
5500-5521
0.002
0
6mer
7231-7252
0.001
0
6mer
5553-5573
0.001
1
LINC00938
hsa-miR-520h
0.847
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5754-5775
0.014
5
7mer
6478-6491
0.007
2
6mer
156-172
0.004
0
6mer
333-353
0.003
1
6mer
6782-6807
0.003
4
8mer
2886-2911
0.003
1
6mer
8190-8194
0.002
Not Conserved
6mer
3800-3817
0.002
3
RP11-332J15.4
hsa-miR-520h
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606566
Biotype: lincRNA
Gene id: ENSG00000272071
Gene Name: RP11-332J15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-423
0.031
1
6mer
419-429
0.007
0
RP11-280G9.1
hsa-miR-520h
0.846
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505627
Biotype: lincRNA
Gene id: ENSG00000251127
Gene Name: RP11-280G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-165
0.013
1
7mer
120-125
0.012
1
6mer
2281-2304
0.005
1
6mer
1480-1501
0.003
2
6mer
511-537
0.002
0
6mer
1383-1404
0.001
0
6mer
1247-1266
0.001
1
6mer
1209-1228
0.001
1
6mer
1171-1190
0.001
0
AP000330.8
hsa-miR-520h
0.846
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
677-700
0.009
1
7mer
2290-2307
0.007
1
6mer
59-81
0.006
0
6mer
2154-2159
0.005
2
6mer
558-576
0.004
1
6mer
1836-1860
0.003
0
7mer
1407-1416
0.003
1
8mer
1539-1560
0.002
0
AP006285.7
hsa-miR-520h
0.846
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000415865
Biotype: lincRNA
Gene id: ENSG00000231487
Gene Name: AP006285.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520h
Sequence: acaaagugcuucccuuuagagu
MirBase ID: MIMAT0002867
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-311
0.021
1
7mer
192-217
0.018
1
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