LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
LINC01002
hsa-miR-519b-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622894
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-280
0.042
1
RP11-259K5.2
hsa-miR-519b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604992
Biotype: antisense
Gene id: ENSG00000270194
Gene Name: RP11-259K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-42
0.038
0
6mer
689-715
0.003
0
RP11-625L16.1
hsa-miR-519b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536131
Biotype: lincRNA
Gene id: ENSG00000255745
Gene Name: RP11-625L16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-318
0.036
Not Conserved
6mer
455-470
0.006
1
CTA-796E4.5
hsa-miR-519b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11221-11243
0.006
2
6mer
128-143
0.005
1
7mer
16022-16044
0.004
2
7mer
20402-20410
0.004
1
6mer
1373-1392
0.003
0
6mer
31099-31119
0.002
0
6mer
24124-24143
0.002
0
6mer
31168-31187
0.002
0
6mer
3283-3304
0.002
1
6mer
8649-8673
0.002
1
6mer
7549-7569
0.002
0
6mer
3479-3495
0.002
1
6mer
29204-29223
0.001
1
7mer
9302-9320
0.001
1
6mer
8181-8201
0.001
Not Conserved
6mer
8798-8812
0.001
2
6mer
29357-29372
0.001
Not Conserved
6mer
11298-11324
0.001
1
LINC00839
hsa-miR-519b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1424-1446
0.029
1
6mer
1424-1439
0.012
1
LINC01061
hsa-miR-519b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4732-4749
0.032
1
7mer
4778-4795
0.007
Not Conserved
6mer
2337-2352
0.002
0
RP4-539M6.22
hsa-miR-519b-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607893
Biotype: lincRNA
Gene id: ENSG00000273428
Gene Name: RP4-539M6.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-284
0.009
0
8mer
163-180
0.006
0
8mer
247-264
0.005
0
7mer
142-158
0.005
0
7mer
416-431
0.003
0
7mer
289-305
0.003
0
7mer
331-347
0.003
0
6mer
436-452
0.003
0
6mer
310-326
0.002
0
6mer
352-368
0.002
0
LINC00839
hsa-miR-519b-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1423-1445
0.029
1
6mer
1423-1438
0.012
1
PWRN2
hsa-miR-519b-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-594
0.027
1
8mer+mismatch
275-297
0.003
Not Conserved
6mer
2727-2731
0.003
0
6mer
219-237
0.003
Not Conserved
6mer
3425-3450
0.002
0
6mer
1507-1522
0.002
Not Conserved
RP11-714L20.1
hsa-miR-519b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507365
Biotype: lincRNA
Gene id: ENSG00000251632
Gene Name: RP11-714L20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1965-1985
0.017
0
8mer
910-924
0.014
1
6mer
2078-2095
0.005
4
7mer
182-200
0.003
0
6mer
944-957
0.002
6
RP11-582J16.4
hsa-miR-519b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514980
Biotype: antisense
Gene id: ENSG00000251034
Gene Name: RP11-582J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
148-174
0.033
2
7mer
452-471
0.008
0
CTA-221G9.11
hsa-miR-519b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
849-867
0.024
0
6mer
155-173
0.017
0
LOC100506639
hsa-miR-519b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-842
0.041
1
XLOC_011677
hsa-miR-519b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024285
Biotype: transcript isomorph
Gene id: XLOC_011677
Gene Name: XLOC_011677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
192-196
0.009
3
8mer
210-224
0.009
0
7mer
4582-4601
0.007
1
7mer
4987-5005
0.005
1
7mer
321-336
0.004
1
7mer
4016-4034
0.002
1
6mer
1463-1467
0.002
1
6mer
1587-1607
0.002
1
7mer
1891-1909
0.002
1
RP11-933H2.4
hsa-miR-519b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000511699
Biotype: retained_intron
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1714-1728
0.029
1
7mer
1085-1106
0.007
0
6mer
339-358
0.005
1
XLOC_003242
hsa-miR-519b-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006651
Biotype: transcript isomorph
Gene id: XLOC_003242
Gene Name: XLOC_003242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-18
0.036
1
6mer
208-231
0.004
0
RP11-580I1.1
hsa-miR-519b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568541
Biotype: lincRNA
Gene id: ENSG00000260780
Gene Name: RP11-580I1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
130-146
0.040
0
RP5-1142A6.9
hsa-miR-519b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564984
Biotype: antisense
Gene id: ENSG00000260121
Gene Name: RP5-1142A6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1281-1302
0.040
11
FAM95C
hsa-miR-519b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_047651.1
Biotype: sense
Gene id: NR_047651.1 (gene)
Gene Name: FAM95C
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-313
0.040
1
LINC01517
hsa-miR-519b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
275-293
0.023
0
6mer
107-120
0.017
0
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