LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
LL22NC03-86G7.1
hsa-miR-519b-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
19346-19362
0.009
11
8mer
32509-32527
0.007
1
7mer
17655-17674
0.005
4
7mer
10570-10583
0.004
1
7mer
37488-37505
0.003
1
6mer
471-498
0.002
0
6mer
866-880
0.002
1
6mer
29275-29301
0.002
1
6mer
36665-36686
0.002
0
6mer
22120-22139
0.002
1
7mer
24951-24970
0.002
2
7mer
29881-29899
0.002
1
6mer
15826-15837
0.001
3
6mer
32899-32917
0.001
3
6mer
3830-3844
0.001
Not Conserved
6mer
36441-36462
0.001
1
6mer
35147-35171
0.001
1
6mer
12162-12188
0.001
1
6mer
12467-12487
0.001
0
6mer
36468-36481
0.001
1
RP11-188D8.1
hsa-miR-519b-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000604156
Biotype: lincRNA
Gene id: ENSG00000271427
Gene Name: RP11-188D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-152
0.049
1
RP5-1065O2.4
hsa-miR-519b-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000624692
Biotype: lincRNA
Gene id: ENSG00000280350
Gene Name: RP5-1065O2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-316
0.042
0
6mer
52-67
0.007
2
RP1-228P16.5
hsa-miR-519b-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547602
Biotype: lincRNA
Gene id: ENSG00000257955
Gene Name: RP1-228P16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-229
0.037
0
7mer
738-753
0.012
1
CTA-342B11.3
hsa-miR-519b-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17124-17143
0.011
1
7mer
17912-17922
0.006
Not Conserved
7mer
20138-20153
0.003
0
8mer+mismatch
6356-6374
0.003
3
7mer
23560-23578
0.003
0
7mer
1301-1319
0.002
1
6mer
1945-1968
0.002
1
6mer
23318-23344
0.002
Not Conserved
6mer
21685-21698
0.002
Not Conserved
6mer
14746-14769
0.002
Not Conserved
6mer
20886-20902
0.002
0
7mer
22841-22859
0.002
Not Conserved
7mer
9355-9373
0.002
0
7mer
22119-22142
0.001
Not Conserved
7mer
7906-7924
0.001
1
7mer
10234-10252
0.001
1
7mer
19584-19602
0.001
0
6mer
2695-2720
0.001
2
6mer
5662-5678
0.001
Not Conserved
7mer
6415-6433
0.001
1
AC138035.2
hsa-miR-519b-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000604354
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-80
0.048
1
AC010745.2
hsa-miR-519b-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420404
Biotype: lincRNA
Gene id: ENSG00000228876
Gene Name: AC010745.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
696-713
0.048
1
RP3-395M20.9
hsa-miR-519b-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424215
Biotype: antisense
Gene id: ENSG00000228037
Gene Name: RP3-395M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-465
0.033
0
7mer
465-484
0.015
Not Conserved
RP11-166D19.1
hsa-miR-519b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529823
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
860-882
0.025
1
8mer
2269-2285
0.015
1
7mer
780-795
0.006
2
6mer
1089-1109
0.003
1
RP11-212E8.1
hsa-miR-519b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577556
Biotype: lincRNA
Gene id: ENSG00000264174
Gene Name: RP11-212E8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
523-537
0.041
5
6mer
11-25
0.007
2
RP11-669C19.1
hsa-miR-519b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566804
Biotype: lincRNA
Gene id: ENSG00000261734
Gene Name: RP11-669C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2236-2260
0.020
1
7mer
624-641
0.010
4
7mer
1261-1278
0.008
2
6mer
1079-1104
0.007
4
6mer
1520-1541
0.004
2
RP13-991F5.2
hsa-miR-519b-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-126
0.021
0
6mer
689-707
0.016
0
6mer
396-416
0.011
0
XLOC_002263
hsa-miR-519b-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003368
Biotype: transcript isomorph
Gene id: XLOC_002263
Gene Name: XLOC_002263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-58
0.044
7
6mer
1527-1545
0.003
4
MIR4534
hsa-miR-519b-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27547-27561
0.005
1
7mer
9240-9255
0.003
1
6mer
19407-19415
0.003
2
7mer
47360-47378
0.003
0
7mer
16643-16664
0.002
2
6mer
3301-3322
0.002
1
6mer
22896-22911
0.002
3
7mer
21990-22008
0.002
0
6mer
16119-16141
0.002
2
6mer
15408-15433
0.002
0
6mer
20669-20695
0.001
5
7mer
21681-21699
0.001
1
6mer
5766-5785
0.001
1
6mer
28171-28191
0.001
1
7mer
5265-5286
0.001
0
7mer
13616-13636
0.001
0
6mer
52418-52440
0.001
0
6mer
23642-23664
0.001
Not Conserved
7mer
45375-45395
0.001
0
7mer
40039-40056
0.001
1
6mer
26720-26737
0.001
2
7mer
39711-39729
0.001
0
7mer
2292-2312
0.001
0
7mer
6926-6944
0.001
1
6mer
29747-29772
0.001
2
7mer
2601-2618
0.001
0
6mer
22155-22173
0.001
0
6mer
36519-36542
0.001
1
7mer
27628-27646
0.001
1
6mer
28204-28221
0.001
1
6mer
26757-26773
0.001
1
6mer
23003-23020
0.001
1
XLOC_001716
hsa-miR-519b-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003910
Biotype: transcript isomorph
Gene id: XLOC_001716
Gene Name: XLOC_001716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-162
0.027
0
8mer
578-591
0.021
2
RP11-239E10.2
hsa-miR-519b-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435108
Biotype: lincRNA
Gene id: ENSG00000236846
Gene Name: RP11-239E10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-508
0.047
1
CTC-428G20.3
hsa-miR-519b-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507241
Biotype: lincRNA
Gene id: ENSG00000248175
Gene Name: CTC-428G20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1960-1979
0.038
1
6mer
1736-1759
0.005
1
6mer
850-869
0.004
1
TTTY10
hsa-miR-519b-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000439472
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
116-132
0.026
0
6mer
125-134
0.021
0
ZNF561-AS1
hsa-miR-519b-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586614
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-129
0.047
1
XLOC_003286
hsa-miR-519b-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006684
Biotype: transcript isomorph
Gene id: XLOC_003286
Gene Name: XLOC_003286
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-314
0.047
1
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