LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
AC018359.1
hsa-miR-519b-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424786
Biotype: lincRNA
Gene id: ENSG00000226320
Gene Name: AC018359.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
522-545
0.033
0
8mer
131-152
0.020
0
AC138035.2
hsa-miR-519b-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-550
0.052
1
MIR6818
hsa-miR-519b-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19534-19554
0.006
0
8mer+wobble
24020-24046
0.004
9
6mer
9551-9569
0.003
8
6mer
5772-5798
0.003
3
6mer
21117-21135
0.003
4
6mer
33713-33734
0.002
5
6mer
2529-2551
0.002
4
6mer
16605-16609
0.002
0
7mer
5131-5151
0.002
1
6mer
18422-18431
0.002
0
6mer
46478-46482
0.002
2
6mer
34118-34136
0.002
0
6mer
15166-15187
0.002
1
6mer
15991-16013
0.002
1
6mer
6056-6074
0.002
0
7mer
27873-27891
0.002
0
6mer
32428-32453
0.001
0
7mer
32675-32693
0.001
1
6mer
13654-13675
0.001
Not Conserved
7mer
11896-11914
0.001
1
6mer
15071-15097
0.001
1
7mer
18049-18067
0.001
1
7mer
4949-4967
0.001
1
7mer
10539-10557
0.001
0
6mer
12851-12873
0.001
0
6mer
6592-6603
0.001
0
6mer
4493-4511
0.001
1
RP5-963E22.5
hsa-miR-519b-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000567259
Biotype: lincRNA
Gene id: ENSG00000260416
Gene Name: RP5-963E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-87
0.031
1
7mer
84-105
0.017
1
7mer
1489-1506
0.004
0
LINC00116
hsa-miR-519b-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027063.1
Biotype: sense
Gene id: NR_027063.1 (gene)
Gene Name: LINC00116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-58
0.048
7
6mer
1142-1160
0.004
4
LINC00507
hsa-miR-519b-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544645
Biotype: lincRNA
Gene id: ENSG00000256193
Gene Name: LINC00507
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-65
0.051
3
RP11-108M12.3
hsa-miR-519b-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554160
Biotype: lincRNA
Gene id: ENSG00000258592
Gene Name: RP11-108M12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-258
0.045
5
6mer
685-703
0.006
5
XLOC_002335
hsa-miR-519b-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003408
Biotype: transcript isomorph
Gene id: XLOC_002335
Gene Name: XLOC_002335
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
935-954
0.048
2
6mer
853-874
0.003
Not Conserved
GAS5-AS1
hsa-miR-519b-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602767
Biotype: antisense
Gene id: ENSG00000270084
Gene Name: GAS5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-486
0.045
1
6mer
215-229
0.006
1
XIST
hsa-miR-519b-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9249-9263
0.008
3
8mer
9553-9576
0.008
1
8mer
2306-2320
0.007
1
7mer
19182-19195
0.006
1
6mer
18455-18474
0.004
2
7mer
8828-8854
0.004
1
6mer
4756-4779
0.003
3
6mer
4021-4040
0.002
1
6mer
7348-7361
0.002
2
6mer
9095-9110
0.002
3
6mer
12501-12528
0.002
0
7mer
14003-14021
0.002
1
6mer
13190-13210
0.002
1
RP11-278I4.2
hsa-miR-519b-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
934-955
0.042
6
6mer
752-777
0.005
5
6mer
859-881
0.004
1
RP11-584P21.2
hsa-miR-519b-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502400
Biotype: lincRNA
Gene id: ENSG00000250075
Gene Name: RP11-584P21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-228
0.047
1
6mer
1226-1235
0.003
0
AC009158.1
hsa-miR-519b-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000452511
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
709-725
0.043
4
6mer
606-629
0.007
2
RP11-61L19.1
hsa-miR-519b-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580891
Biotype: sense_intronic
Gene id: ENSG00000266805
Gene Name: RP11-61L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3328-3342
0.039
1
7mer
3380-3398
0.007
1
6mer
2044-2070
0.003
1
6mer
1575-1596
0.001
1
RP11-166D19.1
hsa-miR-519b-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
863-885
0.027
1
8mer
2272-2288
0.015
1
7mer
783-798
0.006
2
6mer
1092-1112
0.003
1
RP11-77A13.1
hsa-miR-519b-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000556770
Biotype: antisense
Gene id: ENSG00000259094
Gene Name: RP11-77A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-17
0.041
Not Conserved
8mer
201-220
0.006
Not Conserved
6mer
262-280
0.003
Not Conserved
AC006548.28
hsa-miR-519b-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51927-51943
0.004
Not Conserved
7mer
56463-56489
0.003
0
6mer
41050-41077
0.003
1
7mer
2177-2200
0.003
1
7mer
2339-2356
0.002
0
6mer
16543-16560
0.002
1
6mer
44309-44326
0.002
1
6mer
4786-4808
0.002
1
7mer
41470-41491
0.002
1
7mer
59328-59343
0.002
1
7mer
63299-63318
0.002
1
6mer
59469-59493
0.002
1
6mer
60925-60944
0.002
0
6mer
72927-72947
0.002
0
6mer
36097-36118
0.002
1
8mer
41578-41596
0.002
Not Conserved
6mer
67658-67680
0.001
0
7mer
71556-71580
0.001
Not Conserved
6mer
23289-23311
0.001
1
7mer
66883-66901
0.001
0
6mer
36842-36858
0.001
1
6mer
38121-38138
0.001
1
6mer
55725-55738
0.001
0
6mer
12105-12124
0.001
1
7mer
81629-81647
0.001
1
6mer
9470-9487
0.001
0
6mer
24820-24845
0.001
0
6mer
35981-36007
0.001
1
6mer
16449-16464
0.001
0
ZNF561-AS1
hsa-miR-519b-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-129
0.050
1
ZNF561-AS1
hsa-miR-519b-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591056
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-115
0.050
1
AF064858.6
hsa-miR-519b-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000615324
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-96
0.049
1
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