LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
EPB41L4A-AS1
hsa-miR-519b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000442823
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
557-564
0.025
1
RP11-532N4.2
hsa-miR-519b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418467
Biotype: antisense
Gene id: ENSG00000235535
Gene Name: RP11-532N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-615
0.018
1
6mer
84-95
0.006
2
RP11-338L18.1
hsa-miR-519b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473893
Biotype: lincRNA
Gene id: ENSG00000242012
Gene Name: RP11-338L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-97
0.025
9
HOTAIR
hsa-miR-519b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_003716.3
Biotype: lincRNA
Gene id: NR_003716.3 (gene)
Gene Name: HOTAIR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
209-226
0.025
3
AC004125.3
hsa-miR-519b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567624
Biotype: lincRNA
Gene id: ENSG00000260264
Gene Name: AC004125.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-30
0.019
1
7mer
456-467
0.006
0
CTD-2036A18.2
hsa-miR-519b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504046
Biotype: lincRNA
Gene id: ENSG00000249153
Gene Name: CTD-2036A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-332
0.025
2
RP11-227G15.8
hsa-miR-519b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584721
Biotype: lincRNA
Gene id: ENSG00000266385
Gene Name: RP11-227G15.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-493
0.013
0
7mer
496-517
0.008
0
7mer
232-250
0.004
0
XLOC_003146
hsa-miR-519b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006523
Biotype: transcript isomorph
Gene id: XLOC_003146
Gene Name: XLOC_003146
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1669-1691
0.009
0
6mer
1011-1032
0.006
6
6mer
1158-1180
0.005
3
6mer
693-718
0.005
1
RP11-15N24.4
hsa-miR-519b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000569034
Biotype: sense_overlapping
Gene id: ENSG00000261533
Gene Name: RP11-15N24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1961-1982
0.018
1
6mer
2053-2065
0.005
0
6mer
870-884
0.002
1
NR2F2-AS1
hsa-miR-519b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000502125
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-51
0.014
9
8mer
533-558
0.007
1
6mer
585-602
0.004
2
XLOC_008046
hsa-miR-519b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3239-3257
0.009
6
6mer
3957-3966
0.008
8
6mer
367-385
0.004
3
6mer
2828-2840
0.003
2
6mer
3210-3230
0.001
Not Conserved
TMEM108-AS1
hsa-miR-519b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000505721
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2180-2205
0.025
0
LINC00890
hsa-miR-519b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569275
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3239-3257
0.008
6
6mer
3957-3966
0.008
8
6mer
367-385
0.004
3
6mer
2828-2840
0.003
2
6mer
3210-3230
0.001
Not Conserved
RP1-184J9.2
hsa-miR-519b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427154
Biotype: antisense
Gene id: ENSG00000240553
Gene Name: RP1-184J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-507
0.025
8
AC012613.2
hsa-miR-519b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523176
Biotype: antisense
Gene id: ENSG00000253406
Gene Name: AC012613.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3780-3807
0.014
0
7mer
2945-2969
0.005
1
6mer
1941-1968
0.002
0
6mer
883-908
0.002
0
6mer
2860-2878
0.001
1
XLOC_005586
hsa-miR-519b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012054
Biotype: transcript isomorph
Gene id: XLOC_005586
Gene Name: XLOC_005586
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
208-223
0.025
2
RP11-399O19.9
hsa-miR-519b-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562983
Biotype: sense_overlapping
Gene id: ENSG00000261438
Gene Name: RP11-399O19.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1187-1197
0.013
1
6mer
1022-1045
0.008
1
6mer
646-659
0.004
1
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