LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
LOC646762
hsa-miR-519b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024278.1
Biotype: lincRNA
Gene id: NR_024278.1 (gene)
Gene Name: LOC646762
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-349
0.018
0
6mer
3046-3073
0.003
1
6mer
2507-2524
0.002
1
6mer
1470-1485
0.002
0
6mer
3968-3985
0.001
Not Conserved
XLOC_008061
hsa-miR-519b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017462
Biotype: transcript isomorph
Gene id: XLOC_008061
Gene Name: XLOC_008061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-511
0.026
1
RP11-680F8.1
hsa-miR-519b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
782-800
0.013
3
7mer
253-272
0.008
1
6mer
2084-2102
0.004
1
MIR4313
hsa-miR-519b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
206-210
0.018
1
6mer
2848-2870
0.008
0
RP11-29G8.3
hsa-miR-519b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
364-386
0.022
5
7mer
3867-3885
0.003
1
LINC01426
hsa-miR-519b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2561-2583
0.008
0
7mer
1682-1702
0.005
1
6mer
1931-1944
0.004
1
6mer
34-58
0.004
1
6mer
2356-2374
0.003
1
7mer
1606-1627
0.002
0
PCDH9-AS1
hsa-miR-519b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000430861
Biotype: antisense
Gene id: ENSG00000234527
Gene Name: PCDH9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-315
0.025
3
AC114776.3
hsa-miR-519b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-72
0.021
1
7mer
1061-1079
0.004
0
RP11-359B12.2
hsa-miR-519b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543290
Biotype: antisense
Gene id: ENSG00000250132
Gene Name: RP11-359B12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-200
0.025
3
AC011747.4
hsa-miR-519b-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454224
Biotype: lincRNA
Gene id: ENSG00000236008
Gene Name: AC011747.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
90-103
0.006
1
7mer
2739-2757
0.006
1
6mer
68-79
0.005
1
6mer
487-509
0.004
1
7mer
5631-5655
0.002
3
7mer
3642-3660
0.001
1
6mer
1869-1895
0.001
Not Conserved
RP11-171I2.2
hsa-miR-519b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603521
Biotype: antisense
Gene id: ENSG00000270574
Gene Name: RP11-171I2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-725
0.008
3
7mer
1526-1541
0.007
6
6mer
233-251
0.006
6
6mer
1023-1032
0.004
6
HOTAIR
hsa-miR-519b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000424518
Biotype: antisense
Gene id: ENSG00000228630
Gene Name: HOTAIR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
209-226
0.025
3
SNHG14
hsa-miR-519b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557108
Biotype: retained_intron
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1593
0.008
2
6mer
133-150
0.007
2
6mer
2459-2478
0.004
2
7mer
2953-2972
0.003
0
7mer
2554-2572
0.003
1
RP11-50C13.2
hsa-miR-519b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561202
Biotype: sense_intronic
Gene id: ENSG00000259476
Gene Name: RP11-50C13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1279-1305
0.012
5
7mer
1594-1617
0.007
2
6mer
1302-1322
0.006
4
XX-FW83128A1.2
hsa-miR-519b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433825
Biotype: antisense
Gene id: ENSG00000231830
Gene Name: XX-FW83128A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-54
0.025
1
XLOC_001963
hsa-miR-519b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
888-899
0.008
1
7mer
533-555
0.008
3
6mer
324-346
0.005
1
6mer
663-690
0.004
2
RP11-1152H14.1
hsa-miR-519b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604239
Biotype: lincRNA
Gene id: ENSG00000271320
Gene Name: RP11-1152H14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
609-624
0.017
1
6mer
178-198
0.008
3
XLOC_007927
hsa-miR-519b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017138
Biotype: transcript isomorph
Gene id: XLOC_007927
Gene Name: XLOC_007927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
387-407
0.025
2
C12orf36
hsa-miR-519b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000527705
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-83
0.021
2
6mer
46-63
0.004
Not Conserved
RP11-677M14.7
hsa-miR-519b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529392
Biotype: antisense
Gene id: ENSG00000245498
Gene Name: RP11-677M14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2637-2659
0.016
1
7mer
2695-2713
0.006
1
6mer
1362-1376
0.002
1
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