LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009652
hsa-miR-519b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021053
Biotype: transcript isomorph
Gene id: XLOC_009652
Gene Name: XLOC_009652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
236-257
0.021
1
6mer
310-326
0.005
0
AC005083.1
hsa-miR-519b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439058
Biotype: lincRNA
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-665
0.026
0
RP11-456O19.4
hsa-miR-519b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587904
Biotype: lincRNA
Gene id: ENSG00000267712
Gene Name: RP11-456O19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
34-51
0.026
10
XLOC_013424
hsa-miR-519b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027818
Biotype: transcript isomorph
Gene id: XLOC_013424
Gene Name: XLOC_013424
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-22
0.026
0
RP11-820I16.4
hsa-miR-519b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609611
Biotype: antisense
Gene id: ENSG00000273141
Gene Name: RP11-820I16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-507
0.026
0
RP11-227F19.5
hsa-miR-519b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506475
Biotype: antisense
Gene id: ENSG00000249216
Gene Name: RP11-227F19.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-260
0.022
1
6mer
10-32
0.004
1
RP11-161I10.1
hsa-miR-519b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417409
Biotype: lincRNA
Gene id: ENSG00000241505
Gene Name: RP11-161I10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
92-107
0.026
2
CTD-2544N14.3
hsa-miR-519b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520863
Biotype: antisense
Gene id: ENSG00000253645
Gene Name: CTD-2544N14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-398
0.021
2
6mer
85-103
0.005
1
XLOC_011826
hsa-miR-519b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024507
Biotype: transcript isomorph
Gene id: XLOC_011826
Gene Name: XLOC_011826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8053-8072
0.006
0
6mer
186-198
0.004
1
7mer
9170-9187
0.003
0
6mer
5050-5075
0.003
0
6mer
4022-4047
0.002
0
6mer
3723-3740
0.002
Not Conserved
6mer
2156-2172
0.002
Not Conserved
7mer
6696-6709
0.001
0
6mer
2743-2766
0.001
Not Conserved
7mer
3175-3193
0.001
0
6mer
2767-2789
0.001
0
RP11-626G11.5
hsa-miR-519b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576433
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-235
0.026
3
RP11-1151B14.1
hsa-miR-519b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622635
Biotype: lincRNA
Gene id: ENSG00000276403
Gene Name: RP11-1151B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1237-1259
0.012
1
7mer
617-633
0.009
2
6mer
455-481
0.005
2
XLOC_003651
hsa-miR-519b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007401
Biotype: transcript isomorph
Gene id: XLOC_003651
Gene Name: XLOC_003651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1602-1615
0.021
0
6mer
1374-1399
0.005
0
XLOC_001532
hsa-miR-519b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003733
Biotype: transcript isomorph
Gene id: XLOC_001532
Gene Name: XLOC_001532
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2536-2556
0.018
1
7mer
721-737
0.005
1
7mer
1988-2006
0.003
1
LINC00706
hsa-miR-519b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108074.1
Biotype: lincRNA
Gene id: NR_108074.1 (gene)
Gene Name: LINC00706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-95
0.026
1
XLOC_013274
hsa-miR-519b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5628-5645
0.015
1
6mer
4053-4070
0.007
1
6mer
980-998
0.004
0
AC009299.2
hsa-miR-519b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435692
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
54-79
0.018
12
6mer
271-297
0.008
9
RP3-462E2.3
hsa-miR-519b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551450
Biotype: lincRNA
Gene id: ENSG00000257877
Gene Name: RP3-462E2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-298
0.026
1
AP001505.9
hsa-miR-519b-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000569966
Biotype: lincRNA
Gene id: ENSG00000261706
Gene Name: AP001505.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-183
0.026
0
RP4-605O3.4
hsa-miR-519b-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548468
Biotype: antisense
Gene id: ENSG00000272368
Gene Name: RP4-605O3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
608-624
0.022
1
7mer
238-256
0.003
0
CTA-228A9.4
hsa-miR-519b-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4456-4477
0.004
1
7mer
17028-17046
0.004
1
6mer
1204-1222
0.003
2
7mer
3289-3305
0.002
0
7mer
10031-10049
0.002
1
6mer
18132-18150
0.001
1
6mer
11156-11180
0.001
0
7mer
1612-1630
0.001
1
7mer
6112-6130
0.001
1
6mer
19466-19484
0.001
0
7mer
4085-4103
0.001
0
7mer
10716-10734
0.001
1
6mer
5573-5591
0.001
1
7mer
14153-14171
0.001
Not Conserved
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