LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
RAB30-AS1
hsa-miR-519b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501011
Biotype: lincRNA
Gene id: ENSG00000246067
Gene Name: RAB30-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
397-417
0.027
4
LOC100507577
hsa-miR-519b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040677.1
Biotype: sense
Gene id: NR_040677.1 (gene)
Gene Name: LOC100507577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2147-2160
0.017
1
7mer
939-958
0.010
1
RP11-493P1.2
hsa-miR-519b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549725
Biotype: antisense
Gene id: ENSG00000258034
Gene Name: RP11-493P1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-469
0.027
0
LOC100506714
hsa-miR-519b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038957.1
Biotype: lincRNA
Gene id: NR_038957.1 (gene)
Gene Name: LOC100506714
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-279
0.027
Not Conserved
LOC100506714
hsa-miR-519b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038956.1
Biotype: lincRNA
Gene id: NR_038956.1 (gene)
Gene Name: LOC100506714
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-279
0.027
Not Conserved
CTB-33O18.3
hsa-miR-519b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517299
Biotype: antisense
Gene id: ENSG00000253955
Gene Name: CTB-33O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
785-809
0.016
1
7mer
220-239
0.007
1
6mer
990-1015
0.003
0
RP11-379F4.7
hsa-miR-519b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607624
Biotype: lincRNA
Gene id: ENSG00000272087
Gene Name: RP11-379F4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-63
0.027
2
U47924.30
hsa-miR-519b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000606112
Biotype: lincRNA
Gene id: ENSG00000272201
Gene Name: U47924.30
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-847
0.017
0
6mer
1393-1412
0.007
0
6mer
546-570
0.002
3
FIRRE
hsa-miR-519b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000427391
Biotype: lincRNA
Gene id: ENSG00000213468
Gene Name: FIRRE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-56
0.013
1
7mer
2729-2749
0.011
1
8mer
1363-1381
0.003
1
RP11-710F7.2
hsa-miR-519b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512514
Biotype: antisense
Gene id: ENSG00000250740
Gene Name: RP11-710F7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-343
0.027
11
RP11-445F6.2
hsa-miR-519b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441249
Biotype: antisense
Gene id: ENSG00000226571
Gene Name: RP11-445F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-587
0.023
0
6mer
799-821
0.004
1
RP11-629B11.5
hsa-miR-519b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000600169
Biotype: antisense
Gene id: ENSG00000269559
Gene Name: RP11-629B11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
760-781
0.013
1
6mer
1045-1068
0.006
4
6mer
133-150
0.005
1
6mer
1265-1286
0.002
1
RP11-403I13.8
hsa-miR-519b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621033
Biotype: retained_intron
Gene id: ENSG00000272419
Gene Name: RP11-403I13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3024-3044
0.023
0
6mer
2873-2889
0.004
1
AC073626.2
hsa-miR-519b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415146
Biotype: antisense
Gene id: ENSG00000224595
Gene Name: AC073626.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-532
0.026
8
RP11-166D19.1
hsa-miR-519b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531071
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-336
0.026
1
RP11-982M15.5
hsa-miR-519b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555524
Biotype: antisense
Gene id: ENSG00000258858
Gene Name: RP11-982M15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
677-698
0.026
4
LINC00350
hsa-miR-519b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000438640
Biotype: lincRNA
Gene id: ENSG00000225316
Gene Name: LINC00350
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-324
0.026
1
XLOC_012755
hsa-miR-519b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026408
Biotype: transcript isomorph
Gene id: XLOC_012755
Gene Name: XLOC_012755
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-54
0.026
0
RP11-715J22.6
hsa-miR-519b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561847
Biotype: sense_intronic
Gene id: ENSG00000260293
Gene Name: RP11-715J22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
471-495
0.011
6
7mer
5247-5271
0.008
0
6mer
754-772
0.002
1
6mer
4725-4743
0.002
1
6mer
2510-2536
0.002
1
6mer
2567-2586
0.001
1
SLC26A4-AS1
hsa-miR-519b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000591896
Biotype: antisense
Gene id: ENSG00000233705
Gene Name: SLC26A4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-381
0.026
1
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