LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
RP11-710F7.2
hsa-miR-519b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511059
Biotype: antisense
Gene id: ENSG00000250740
Gene Name: RP11-710F7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-345
0.027
11
CTD-2377D24.6
hsa-miR-519b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000478824
Biotype: lincRNA
Gene id: ENSG00000244649
Gene Name: CTD-2377D24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1379-1400
0.027
1
CTC-344H19.4
hsa-miR-519b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601033
Biotype: lincRNA
Gene id: ENSG00000268401
Gene Name: CTC-344H19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-437
0.027
0
CTD-2015H6.3
hsa-miR-519b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504300
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-65
0.023
2
7mer
419-437
0.004
1
RP11-796E2.4
hsa-miR-519b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
338-363
0.013
1
7mer
548-565
0.007
1
7mer
3147-3163
0.004
1
6mer
4416-4433
0.002
0
LINC01004
hsa-miR-519b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4453-4473
0.010
2
7mer
8219-8239
0.006
1
7mer
6663-6678
0.004
1
6mer
8401-8417
0.003
0
7mer
4717-4738
0.003
2
6mer
2207-2233
0.002
5
RP11-390E23.6
hsa-miR-519b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607957
Biotype: antisense
Gene id: ENSG00000272686
Gene Name: RP11-390E23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-626
0.016
1
9mer
1025-1042
0.008
2
6mer
930-951
0.004
1
RP11-403I13.7
hsa-miR-519b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424684
Biotype: lincRNA
Gene id: ENSG00000263590
Gene Name: RP11-403I13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4880-4900
0.021
0
6mer
4729-4745
0.004
1
6mer
962-978
0.002
0
LINC00937
hsa-miR-519b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536539
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-86
0.021
0
7mer
273-291
0.006
1
CTD-2015H6.3
hsa-miR-519b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508000
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-484
0.014
2
6mer
92-110
0.009
1
7mer
838-856
0.004
1
CTC-369A16.2
hsa-miR-519b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510004
Biotype: lincRNA
Gene id: ENSG00000251421
Gene Name: CTC-369A16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-460
0.015
5
7mer
110-124
0.012
1
LINC01422
hsa-miR-519b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434868
Biotype: lincRNA
Gene id: ENSG00000223704
Gene Name: LINC01422
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5869-5896
0.009
1
6mer
2751-2773
0.006
11
6mer
5753-5777
0.004
1
7mer
1588-1601
0.003
0
6mer
2925-2950
0.003
6
7mer
1312-1330
0.002
0
RP11-384J4.2
hsa-miR-519b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000552303
Biotype: lincRNA
Gene id: ENSG00000258081
Gene Name: RP11-384J4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-290
0.027
1
CTD-2076M15.1
hsa-miR-519b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561587
Biotype: lincRNA
Gene id: ENSG00000260683
Gene Name: CTD-2076M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1172-1197
0.012
1
6mer
804-817
0.010
1
6mer
1381-1403
0.004
0
RP11-522N14.2
hsa-miR-519b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539391
Biotype: lincRNA
Gene id: ENSG00000256596
Gene Name: RP11-522N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1765-1788
0.027
1
XLOC_009484
hsa-miR-519b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019684
Biotype: transcript isomorph
Gene id: XLOC_009484
Gene Name: XLOC_009484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
458-481
0.008
1
6mer
193-211
0.008
1
6mer
13-31
0.006
1
7mer
791-810
0.005
1
NEXN-AS1
hsa-miR-519b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000620892
Biotype: antisense
Gene id: ENSG00000235927
Gene Name: NEXN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-403
0.022
1
7mer
224-242
0.005
1
XLOC_007324
hsa-miR-519b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1681-1695
0.027
1
CTD-2619J13.8
hsa-miR-519b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599109
Biotype: processed_transcript
Gene id: ENSG00000268230
Gene Name: CTD-2619J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-88
0.024
1
6mer
928-944
0.003
Not Conserved
LINC00846
hsa-miR-519b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-301
0.018
1
7mer
1203-1212
0.009
0
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