LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
MLIP-AS1
hsa-miR-519b-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590739
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-695
0.028
3
MLIP-AS1
hsa-miR-519b-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588900
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-593
0.028
3
XLOC_009233
hsa-miR-519b-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019409
Biotype: transcript isomorph
Gene id: XLOC_009233
Gene Name: XLOC_009233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
666-686
0.018
4
6mer
2407-2427
0.004
0
7mer
302-320
0.003
1
7mer
1759-1777
0.003
0
RP11-374M1.2
hsa-miR-519b-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-176
0.028
1
RP11-424M24.5
hsa-miR-519b-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574178
Biotype: lincRNA
Gene id: ENSG00000262890
Gene Name: RP11-424M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
31-57
0.028
0
RP11-554D14.7
hsa-miR-519b-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552154
Biotype: lincRNA
Gene id: ENSG00000257141
Gene Name: RP11-554D14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
402-425
0.028
0
MLIP-AS1
hsa-miR-519b-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434196
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1386-1405
0.028
3
RP11-843B15.4
hsa-miR-519b-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619744
Biotype: sense_intronic
Gene id: ENSG00000277342
Gene Name: RP11-843B15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-95
0.024
4
6mer
227-244
0.004
1
LINC00937
hsa-miR-519b-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538304
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-98
0.022
0
7mer
285-303
0.006
1
RP11-643A5.2
hsa-miR-519b-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557976
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-85
0.013
2
6mer
101-120
0.006
1
6mer
601-622
0.005
0
6mer
984-1010
0.005
Not Conserved
XLOC_001855
hsa-miR-519b-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004016
Biotype: transcript isomorph
Gene id: XLOC_001855
Gene Name: XLOC_001855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-352
0.028
0
AC007308.6
hsa-miR-519b-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2112-2131
0.010
1
7mer
1549-1562
0.009
2
7mer
1829-1846
0.007
0
7mer
523-541
0.002
Not Conserved
DSCAM-IT1
hsa-miR-519b-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440363
Biotype: sense_intronic
Gene id: ENSG00000233756
Gene Name: DSCAM-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
686-707
0.020
1
6mer
168-189
0.008
1
RP11-214K3.20
hsa-miR-519b-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602601
Biotype: sense_intronic
Gene id: ENSG00000269938
Gene Name: RP11-214K3.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-383
0.028
Not Conserved
RP11-46H11.3
hsa-miR-519b-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
216-238
0.015
0
6mer
830-842
0.013
0
CTA-929C8.9
hsa-miR-519b-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14537-14561
0.007
0
7mer
16194-16217
0.002
1
6mer
10659-10669
0.002
0
6mer
22282-22303
0.002
Not Conserved
6mer
2404-2418
0.002
1
6mer
16760-16787
0.002
0
6mer
23717-23721
0.002
1
6mer
5634-5660
0.002
1
6mer
13852-13875
0.002
0
6mer
14404-14414
0.002
1
6mer
22505-22531
0.001
0
7mer
1626-1644
0.001
1
6mer
17140-17160
0.001
0
6mer
17866-17881
0.001
0
OPCML-IT1
hsa-miR-519b-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533859
Biotype: sense_intronic
Gene id: ENSG00000254896
Gene Name: OPCML-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2084-2106
0.018
2
6mer
2664-2680
0.005
1
6mer
928-945
0.003
4
7mer
1175-1198
0.002
1
TMEM108-AS1
hsa-miR-519b-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504993
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
598-623
0.028
0
DEPDC1-AS1
hsa-miR-519b-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428732
Biotype: antisense
Gene id: ENSG00000234264
Gene Name: DEPDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1234-1244
0.028
0
CTD-2034I4.2
hsa-miR-519b-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558153
Biotype: lincRNA
Gene id: ENSG00000259594
Gene Name: CTD-2034I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-346
0.028
1
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