LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011417
hsa-miR-519b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023613
Biotype: transcript isomorph
Gene id: XLOC_011417
Gene Name: XLOC_011417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-166
0.014
2
7mer
782-808
0.012
3
6mer
3000-3019
0.003
0
HAND2-AS1
hsa-miR-519b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
504-525
0.009
7
7mer
785-804
0.007
Not Conserved
7mer
2427-2448
0.006
8
6mer
588-604
0.004
4
6mer
336-356
0.003
1
XLOC_010018
hsa-miR-519b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021291
Biotype: transcript isomorph
Gene id: XLOC_010018
Gene Name: XLOC_010018
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-368
0.022
1
6mer
28-39
0.008
2
RP11-99A1.2
hsa-miR-519b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590604
Biotype: lincRNA
Gene id: ENSG00000267311
Gene Name: RP11-99A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
238-255
0.012
1
7mer
970-987
0.011
1
6mer
478-490
0.006
2
XLOC_006976
hsa-miR-519b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
11-15
0.009
0
7mer
1566-1584
0.008
1
6mer
1733-1751
0.008
1
7mer
2150-2168
0.005
0
LOC100128885
hsa-miR-519b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4286-4307
0.008
0
7mer
3111-3135
0.006
0
6mer
809-826
0.005
0
6mer
3306-3329
0.005
0
6mer
1440-1444
0.004
0
6mer
2646-2663
0.001
Not Conserved
XLOC_010463
hsa-miR-519b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-666
0.013
2
7mer
10979-10999
0.006
1
6mer
2131-2158
0.003
1
6mer
3761-3777
0.002
3
6mer
9995-10014
0.002
1
6mer
10822-10844
0.002
1
7mer
6757-6775
0.001
1
RP11-872J21.5
hsa-miR-519b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000618976
Biotype: sense_intronic
Gene id: ENSG00000276182
Gene Name: RP11-872J21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-569
0.029
6
XLOC_006942
hsa-miR-519b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014875
Biotype: transcript isomorph
Gene id: XLOC_006942
Gene Name: XLOC_006942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
992-1007
0.018
1
7mer
1524-1543
0.005
1
6mer
1064-1083
0.004
1
6mer
540-566
0.002
1
XLOC_001712
hsa-miR-519b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003907
Biotype: transcript isomorph
Gene id: XLOC_001712
Gene Name: XLOC_001712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-321
0.029
1
AC005154.6
hsa-miR-519b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4202-4227
0.006
0
6mer
3903-3925
0.003
2
6mer
9707-9732
0.003
1
8mer
7995-8017
0.003
1
7mer
2810-2825
0.003
1
6mer
5965-5981
0.003
1
7mer
3052-3076
0.002
1
6mer
13809-13824
0.002
1
7mer
12162-12180
0.001
1
7mer
11879-11897
0.001
1
6mer
3844-3857
0.001
0
6mer
7958-7977
0.001
1
OXCT1-AS1
hsa-miR-519b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508458
Biotype: antisense
Gene id: ENSG00000248668
Gene Name: OXCT1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1431-1445
0.009
7
7mer
897-918
0.008
1
6mer
1398-1412
0.006
1
6mer
1515-1533
0.003
1
6mer
424-440
0.002
0
RAB30-AS1
hsa-miR-519b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528156
Biotype: lincRNA
Gene id: ENSG00000246067
Gene Name: RAB30-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-514
0.029
4
RP11-209D14.4
hsa-miR-519b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583067
Biotype: sense_intronic
Gene id: ENSG00000266126
Gene Name: RP11-209D14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-236
0.020
0
6mer
300-315
0.009
0
COX10-AS1
hsa-miR-519b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623598
Biotype: TEC
Gene id: ENSG00000236088
Gene Name: COX10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1823-1845
0.029
0
CTB-92J24.2
hsa-miR-519b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
414-438
0.019
0
6mer
803-817
0.010
0
RP11-65D24.2
hsa-miR-519b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000375713
Biotype: lincRNA
Gene id: ENSG00000204398
Gene Name: RP11-65D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-400
0.029
1
C9orf106
hsa-miR-519b-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000316786
Biotype: lincRNA
Gene id: ENSG00000179082
Gene Name: C9orf106
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
900-915
0.012
0
6mer
110-137
0.007
3
7mer
2083-2106
0.005
1
6mer
2884-2902
0.003
1
6mer
2015-2027
0.003
1
AC008268.1
hsa-miR-519b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425887
Biotype: lincRNA
Gene id: ENSG00000235584
Gene Name: AC008268.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-655
0.014
1
7mer
1055-1073
0.013
2
6mer
422-441
0.002
0
XLOC_008620
hsa-miR-519b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018340
Biotype: transcript isomorph
Gene id: XLOC_008620
Gene Name: XLOC_008620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
812-838
0.029
2
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