LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
RP11-552F3.9
hsa-miR-519b-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586076
Biotype: antisense
Gene id: ENSG00000267801
Gene Name: RP11-552F3.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3152-3171
0.075
2
TTTY10
hsa-miR-519b-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-273
0.024
0
6mer
204-216
0.021
0
6mer
592-601
0.015
0
8mer+mismatch
583-599
0.015
0
RP11-475A13.2
hsa-miR-519b-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
841-866
0.066
1
6mer
2213-2236
0.008
0
RP11-171I2.4
hsa-miR-519b-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605334
Biotype: lincRNA
Gene id: ENSG00000271141
Gene Name: RP11-171I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-413
0.060
7
7mer
28-42
0.013
10
RP3-323A16.1
hsa-miR-519b-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18593-18610
0.005
1
7mer
31792-31810
0.004
1
6mer
53939-53958
0.004
1
8mer
42744-42763
0.003
0
6mer
37552-37575
0.003
6
7mer
31646-31671
0.003
0
6mer
25704-25715
0.002
1
6mer
53289-53310
0.002
1
6mer
14825-14845
0.002
2
6mer
18915-18936
0.002
1
6mer
7409-7430
0.002
0
7mer
40258-40277
0.002
1
6mer
9819-9838
0.002
1
6mer
2019-2044
0.002
1
6mer
28818-28834
0.002
1
7mer
38888-38906
0.002
1
7mer
44779-44797
0.002
0
7mer
10836-10854
0.002
1
6mer
36875-36888
0.002
2
6mer
40438-40460
0.002
2
6mer
19360-19376
0.002
Not Conserved
6mer
40193-40212
0.002
1
6mer
47838-47848
0.002
1
6mer
10114-10118
0.002
0
6mer
39882-39904
0.002
1
7mer
28240-28258
0.001
1
7mer
3003-3023
0.001
1
7mer
36600-36618
0.001
1
6mer
32854-32879
0.001
0
7mer
11845-11862
0.001
1
6mer
1283-1309
0.001
Not Conserved
7mer
19373-19388
0.001
Not Conserved
6mer
11779-11800
0.001
1
6mer
35024-35047
0.001
1
7mer
17535-17561
0.001
Not Conserved
6mer
20161-20182
0.001
Not Conserved
7mer
47951-47969
0.001
0
6mer
7443-7468
0.001
0
RP11-162A12.4
hsa-miR-519b-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622010
Biotype: lincRNA
Gene id: ENSG00000278107
Gene Name: RP11-162A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-220
0.064
1
6mer
143-159
0.007
0
LINC00265
hsa-miR-519b-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448955
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-158
0.071
1
FAM157C
hsa-miR-519b-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566898
Biotype: lincRNA
Gene id: ENSG00000260528
Gene Name: FAM157C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-378
0.071
1
RP11-340I6.8
hsa-miR-519b-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450544
Biotype: lincRNA
Gene id: ENSG00000226581
Gene Name: RP11-340I6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-266
0.044
0
7mer
177-201
0.027
0
XLOC_007710
hsa-miR-519b-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1911-1935
0.060
0
7mer
1098-1116
0.009
0
AC002480.2
hsa-miR-519b-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414116
Biotype: lincRNA
Gene id: ENSG00000238033
Gene Name: AC002480.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-55
0.050
0
8mer
506-525
0.016
0
6mer
1493-1516
0.002
2
RP13-753N3.1
hsa-miR-519b-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584157
Biotype: antisense
Gene id: ENSG00000263531
Gene Name: RP13-753N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-24
0.024
0
7mer
516-534
0.023
0
7mer
142-160
0.021
0
AC005592.3
hsa-miR-519b-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000566527
Biotype: lincRNA
Gene id: ENSG00000261757
Gene Name: AC005592.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
532-554
0.035
1
7mer
453-477
0.008
0
6mer
742-768
0.008
2
6mer
122-126
0.007
Not Conserved
6mer
312-335
0.006
1
6mer
821-835
0.004
2
RP11-909M7.3
hsa-miR-519b-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110178.1
Biotype: lincRNA
Gene id: NR_110178.1 (gene)
Gene Name: RP11-909M7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
711-729
0.035
0
8mer
880-899
0.021
1
6mer
208-224
0.005
1
7mer
544-560
0.005
0
FLJ32255
hsa-miR-519b-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-459
0.052
1
6mer
1075-1098
0.013
1
RP11-1086F11.1
hsa-miR-519b-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417786
Biotype: sense_intronic
Gene id: ENSG00000225300
Gene Name: RP11-1086F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1053-1076
0.041
1
7mer
1676-1697
0.022
1
RP11-166D19.1
hsa-miR-519b-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524376
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
856-878
0.029
1
8mer
2265-2281
0.025
1
7mer
776-791
0.007
2
6mer
1085-1105
0.003
1
LINC00494
hsa-miR-519b-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425021
Biotype: lincRNA
Gene id: ENSG00000235621
Gene Name: LINC00494
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-222
0.063
4
RP11-764K9.1
hsa-miR-519b-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1911-1935
0.052
0
7mer
1098-1116
0.009
0
XLOC_006442
hsa-miR-519b-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013801
Biotype: transcript isomorph
Gene id: XLOC_006442
Gene Name: XLOC_006442
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-210
0.061
0
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